miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 1252 0.66 0.999999
Target:  5'- gGCGG-GGACGggGAcggGGGCCuuUCGCg- -3'
miRNA:   3'- -CGUCuCUUGCuuUU---UCUGGu-AGUGgu -5'
30227 3' -46 NC_006273.1 + 3437 0.66 0.999997
Target:  5'- uGCAGAacggcGACGGAGAGGAgCGUguCCGc -3'
miRNA:   3'- -CGUCUc----UUGCUUUUUCUgGUAguGGU- -5'
30227 3' -46 NC_006273.1 + 7408 0.7 0.99958
Target:  5'- cGCuGAGAugGAAccGAAGucgcuGCCGuUCGCCAg -3'
miRNA:   3'- -CGuCUCUugCUU--UUUC-----UGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 8160 0.67 0.999991
Target:  5'- aGCAGcAGAGCuaauAAAAGGACgCA-CACCAg -3'
miRNA:   3'- -CGUC-UCUUGc---UUUUUCUG-GUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 13491 0.7 0.99958
Target:  5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3'
miRNA:   3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 14545 0.7 0.999736
Target:  5'- aCGGAGGACGGAAucauuACCGcCGCCAa -3'
miRNA:   3'- cGUCUCUUGCUUUuuc--UGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 19227 0.67 0.999988
Target:  5'- aGCGacGAGGACGAAAgcGGCCGcccccggagaaUUGCCAa -3'
miRNA:   3'- -CGU--CUCUUGCUUUuuCUGGU-----------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 20135 0.67 0.999994
Target:  5'- gGCAGAGGaugcACGAGAcgcGGACgCAgaacgugccgaaUCACCAc -3'
miRNA:   3'- -CGUCUCU----UGCUUUu--UCUG-GU------------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 20511 0.67 0.999988
Target:  5'- cGCAGcGGcuuUGugccGAGACCGUCGCCAc -3'
miRNA:   3'- -CGUCuCUu--GCuuu-UUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 20899 0.76 0.971299
Target:  5'- -aGGAGAACGAGGAagguGGACCGugugaaUCGCCGc -3'
miRNA:   3'- cgUCUCUUGCUUUU----UCUGGU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 22697 0.7 0.999475
Target:  5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3'
miRNA:   3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5'
30227 3' -46 NC_006273.1 + 31768 0.7 0.999736
Target:  5'- ----cGGACGAAAGugGGGCCGUCugCAc -3'
miRNA:   3'- cgucuCUUGCUUUU--UCUGGUAGugGU- -5'
30227 3' -46 NC_006273.1 + 32283 0.71 0.998544
Target:  5'- -----cGACGAGcgGGACCGUCACCGu -3'
miRNA:   3'- cgucucUUGCUUuuUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 33851 0.68 0.999969
Target:  5'- cGCGGGGAGC-AGAAAGuagUCGUCgACCAg -3'
miRNA:   3'- -CGUCUCUUGcUUUUUCu--GGUAG-UGGU- -5'
30227 3' -46 NC_006273.1 + 34048 0.77 0.953633
Target:  5'- cGCGGAGGGCGAcaaAGAGGAgUgGUCGCCGc -3'
miRNA:   3'- -CGUCUCUUGCU---UUUUCU-GgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 34868 0.73 0.995863
Target:  5'- aGCGGAucGCGAAAuAGGCgcuCGUCACCGu -3'
miRNA:   3'- -CGUCUcuUGCUUUuUCUG---GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 36944 0.66 0.999997
Target:  5'- gGCAGGuGGCGugcGAGACCGU-GCCAa -3'
miRNA:   3'- -CGUCUcUUGCuuuUUCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 37255 0.67 0.999996
Target:  5'- gGCGGcGAcgACGAGGAGGaagacGCCGUgGCCGc -3'
miRNA:   3'- -CGUCuCU--UGCUUUUUC-----UGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 37346 0.67 0.999994
Target:  5'- aGCGGAGGugGGccGGGGCCcguUUugCAu -3'
miRNA:   3'- -CGUCUCUugCUuuUUCUGGu--AGugGU- -5'
30227 3' -46 NC_006273.1 + 38515 0.67 0.999996
Target:  5'- -gGGAGGACGAAggaggggagacGAGGACgAcgggCACCAc -3'
miRNA:   3'- cgUCUCUUGCUU-----------UUUCUGgUa---GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.