miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 72868 0.7 0.999736
Target:  5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3'
miRNA:   3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5'
30227 3' -46 NC_006273.1 + 73006 0.7 0.999793
Target:  5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3'
miRNA:   3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5'
30227 3' -46 NC_006273.1 + 73308 0.68 0.999969
Target:  5'- uCGGAGAcgACGAuu--GGCCAUgACCGc -3'
miRNA:   3'- cGUCUCU--UGCUuuuuCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 74539 0.86 0.585899
Target:  5'- cCAGAGA--GGAAGAGACCAUCACCGa -3'
miRNA:   3'- cGUCUCUugCUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 76246 0.67 0.999988
Target:  5'- -aGGAGGagACGAuccGGGCCGUCACa- -3'
miRNA:   3'- cgUCUCU--UGCUuuuUCUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 82065 0.69 0.999875
Target:  5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3'
miRNA:   3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 82300 0.71 0.998798
Target:  5'- cGCGGcguGGAUGAc-GAGGCCGUCAUCGa -3'
miRNA:   3'- -CGUCu--CUUGCUuuUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 83491 0.69 0.999875
Target:  5'- cGCAGGuGGACGAGAuccAGGACCugcgCACg- -3'
miRNA:   3'- -CGUCU-CUUGCUUU---UUCUGGua--GUGgu -5'
30227 3' -46 NC_006273.1 + 83833 0.73 0.993463
Target:  5'- uCAGGGGGCcGAAGAGGCCAUCGuauacuCCAa -3'
miRNA:   3'- cGUCUCUUGcUUUUUCUGGUAGU------GGU- -5'
30227 3' -46 NC_006273.1 + 84023 0.67 0.999996
Target:  5'- uGCAGcc-GCGAGAAGGcgcGCCggCGCCAa -3'
miRNA:   3'- -CGUCucuUGCUUUUUC---UGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 85231 0.69 0.999904
Target:  5'- -aAGAacaaGACGGAGGAGAcaCCGUCGCCGu -3'
miRNA:   3'- cgUCUc---UUGCUUUUUCU--GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 86888 0.66 0.999998
Target:  5'- aCGGAGGACGGuacgguAGAAGGCCG-C-CCGg -3'
miRNA:   3'- cGUCUCUUGCU------UUUUCUGGUaGuGGU- -5'
30227 3' -46 NC_006273.1 + 88647 0.68 0.999945
Target:  5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3'
miRNA:   3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 98585 0.67 0.999996
Target:  5'- cGCGGAGAcGCGAGAc--ACCggCACCc -3'
miRNA:   3'- -CGUCUCU-UGCUUUuucUGGuaGUGGu -5'
30227 3' -46 NC_006273.1 + 99160 0.75 0.981462
Target:  5'- cGguGGGGAaaaGGAGGGGGCCGUCAUUAa -3'
miRNA:   3'- -CguCUCUUg--CUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 102715 0.68 0.999959
Target:  5'- aCAGAGGACGuuguuuuuugGAAAAcGCCGUUACCc -3'
miRNA:   3'- cGUCUCUUGC----------UUUUUcUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 105177 0.71 0.999348
Target:  5'- cGC-GAGGACGggGAA-ACgGUCGCCGc -3'
miRNA:   3'- -CGuCUCUUGCuuUUUcUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 105355 0.69 0.999875
Target:  5'- -aGGAGGAUGAAGu-GACCgugauGUCGCCGu -3'
miRNA:   3'- cgUCUCUUGCUUUuuCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 107458 0.69 0.999927
Target:  5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3'
miRNA:   3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 109297 0.68 0.999969
Target:  5'- uGUAGGGAuccaggGCGAAAAGGAC-GUCGuCCGa -3'
miRNA:   3'- -CGUCUCU------UGCUUUUUCUGgUAGU-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.