miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 109590 0.66 0.999999
Target:  5'- uCGGAGAcggucagcGCGGAGAAGGau-UCGCCGa -3'
miRNA:   3'- cGUCUCU--------UGCUUUUUCUgguAGUGGU- -5'
30227 3' -46 NC_006273.1 + 112389 0.78 0.939609
Target:  5'- aGCAGu--GCGAgcucgacGAAGGACCGUCGCCGc -3'
miRNA:   3'- -CGUCucuUGCU-------UUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 115745 0.67 0.999991
Target:  5'- aCGGAGAcggACGAAcGAGGCCAaggaucaugcuguuUCugCAu -3'
miRNA:   3'- cGUCUCU---UGCUUuUUCUGGU--------------AGugGU- -5'
30227 3' -46 NC_006273.1 + 116330 0.67 0.999994
Target:  5'- -aAGAGGACGAcGAAGAugaccucuccuCCA-CACCGa -3'
miRNA:   3'- cgUCUCUUGCUuUUUCU-----------GGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 118623 0.66 0.999999
Target:  5'- gGCuGGAGAGCGA--GAGGCCGgcguaGCUg -3'
miRNA:   3'- -CG-UCUCUUGCUuuUUCUGGUag---UGGu -5'
30227 3' -46 NC_006273.1 + 118766 0.67 0.999994
Target:  5'- cGCAGcccaGGCaAAAAAGACCGUCGCgGa -3'
miRNA:   3'- -CGUCuc--UUGcUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 118958 0.71 0.999014
Target:  5'- cGUAGcGGGCGAGAAagccgcccacguAGACCggCGCCAc -3'
miRNA:   3'- -CGUCuCUUGCUUUU------------UCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 120055 0.72 0.998244
Target:  5'- uGCAGAGGACGGAGGAacuuucGGCCGaaaCAUCGa -3'
miRNA:   3'- -CGUCUCUUGCUUUUU------CUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 120134 0.78 0.944865
Target:  5'- aGCAGAGAACc--GAGGGCCGgcUCACCu -3'
miRNA:   3'- -CGUCUCUUGcuuUUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 128739 0.67 0.999991
Target:  5'- cGgGGAGGAUGAAGcgucgucGCCAUUACCGu -3'
miRNA:   3'- -CgUCUCUUGCUUUuuc----UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 129732 0.67 0.999991
Target:  5'- cGCGGAGGAagc--AAGGCCGcCGCCGu -3'
miRNA:   3'- -CGUCUCUUgcuuuUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 130763 0.7 0.999793
Target:  5'- cGCuccGAGGACGucgc-GGCUAUCACCGu -3'
miRNA:   3'- -CGu--CUCUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 136678 0.68 0.999969
Target:  5'- --uGAGGACGAGGAGacgacgaccGGCCGgUCGCCGc -3'
miRNA:   3'- cguCUCUUGCUUUUU---------CUGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 137676 0.8 0.885586
Target:  5'- cGUAGAGAACGAuggAGGAcGACCAaCACCGa -3'
miRNA:   3'- -CGUCUCUUGCU---UUUU-CUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 139568 0.69 0.999927
Target:  5'- gGCAuGAcGAGCGAGAgaaccgucGAGAaaGUCACCAa -3'
miRNA:   3'- -CGU-CU-CUUGCUUU--------UUCUggUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 141045 0.66 0.999999
Target:  5'- gGCGGuGGGACGGgcccgcgGAcGGACCggCGCCGg -3'
miRNA:   3'- -CGUC-UCUUGCU-------UUuUCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 141623 0.76 0.964935
Target:  5'- uGCAGcccuaGGAACaGGGAAGACUGUCGCCAc -3'
miRNA:   3'- -CGUC-----UCUUGcUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 143839 0.66 0.999999
Target:  5'- gGCGGGGAAaauacuGAGGcgccGCCAUCAUCAu -3'
miRNA:   3'- -CGUCUCUUgcuu--UUUC----UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 144762 0.67 0.999991
Target:  5'- uGCGGAGGcACGAcgcggcGGCCGUgGCCu -3'
miRNA:   3'- -CGUCUCU-UGCUuuuu--CUGGUAgUGGu -5'
30227 3' -46 NC_006273.1 + 146774 0.67 0.999991
Target:  5'- cGUAGAccACGAAGAcGGCUAaCACCAu -3'
miRNA:   3'- -CGUCUcuUGCUUUUuCUGGUaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.