miRNA display CGI


Results 101 - 120 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 198011 0.72 0.99702
Target:  5'- uGUGGAGGACGggGuGGAgCggGUCGCCGa -3'
miRNA:   3'- -CGUCUCUUGCuuUuUCUgG--UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 201865 0.68 0.999966
Target:  5'- aCAGAGAGagaaGGGuuuucgggucacgcGAAGACCGcUCACCGg -3'
miRNA:   3'- cGUCUCUUg---CUU--------------UUUCUGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 202193 0.74 0.990056
Target:  5'- ---cGGAACGGAGGAGGCUuUCGCCAc -3'
miRNA:   3'- cgucUCUUGCUUUUUCUGGuAGUGGU- -5'
30227 3' -46 NC_006273.1 + 203282 0.68 0.999983
Target:  5'- aGCAGGGuGACGGAGGAGACacccguguguUCgACCGg -3'
miRNA:   3'- -CGUCUC-UUGCUUUUUCUGgu--------AG-UGGU- -5'
30227 3' -46 NC_006273.1 + 204575 0.71 0.998544
Target:  5'- --cGAGGACGcAGAcGACCGUCGCUg -3'
miRNA:   3'- cguCUCUUGCuUUUuCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 205417 0.7 0.999475
Target:  5'- cCGGAGGACGu-GAAGGCUuggaGUCACUAc -3'
miRNA:   3'- cGUCUCUUGCuuUUUCUGG----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 208022 0.69 0.999927
Target:  5'- cCAGAGAAgGGAGGGGGCaaaaACCAg -3'
miRNA:   3'- cGUCUCUUgCUUUUUCUGguagUGGU- -5'
30227 3' -46 NC_006273.1 + 208662 0.7 0.999736
Target:  5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3'
miRNA:   3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 210766 0.67 0.999994
Target:  5'- aGCGGAaauacacgaaGAGCGc-GGAGGCCAcaggCACCAg -3'
miRNA:   3'- -CGUCU----------CUUGCuuUUUCUGGUa---GUGGU- -5'
30227 3' -46 NC_006273.1 + 211659 0.67 0.999996
Target:  5'- uGCAGAGGcuaaaaagcACGcaagccAAGAGGCCcgagaagGUCACCAg -3'
miRNA:   3'- -CGUCUCU---------UGCu-----UUUUCUGG-------UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 211708 0.68 0.999969
Target:  5'- cGUAGAGGAgGAGcaggcgcuGGCCAcgaUCACCGa -3'
miRNA:   3'- -CGUCUCUUgCUUuuu-----CUGGU---AGUGGU- -5'
30227 3' -46 NC_006273.1 + 212057 0.73 0.994363
Target:  5'- cGCGGGGGugGggGcgcccAGGCCGUC-CCGg -3'
miRNA:   3'- -CGUCUCUugCuuUu----UCUGGUAGuGGU- -5'
30227 3' -46 NC_006273.1 + 212086 0.7 0.999736
Target:  5'- aCAGAGuGAUGGcuGAGACCAacacgaugucucUCGCCAa -3'
miRNA:   3'- cGUCUC-UUGCUuuUUCUGGU------------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 212752 1.13 0.025966
Target:  5'- uGCAGAGAACGAAAAAGACCAUCACCAg -3'
miRNA:   3'- -CGUCUCUUGCUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 213647 0.66 0.999998
Target:  5'- gGCAGcugagaucuaccgccAGGGCGAGAAGaGCCG-CGCCGa -3'
miRNA:   3'- -CGUC---------------UCUUGCUUUUUcUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 213960 0.73 0.99516
Target:  5'- aGCAGAGGugGAcucggauAGAGACCucUgGCCAg -3'
miRNA:   3'- -CGUCUCUugCUu------UUUCUGGu-AgUGGU- -5'
30227 3' -46 NC_006273.1 + 214382 0.68 0.999977
Target:  5'- aGCAGAgcGAGCGugaggaacGAAAGcAgCAUCACCAc -3'
miRNA:   3'- -CGUCU--CUUGCu-------UUUUC-UgGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 216034 0.71 0.999196
Target:  5'- gGUAGGGAGCcuGGGAGuCCAUCGCUu -3'
miRNA:   3'- -CGUCUCUUGcuUUUUCuGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 225668 0.66 0.999999
Target:  5'- cGCAGAaAGCaGAu---GACCAgugCACCAa -3'
miRNA:   3'- -CGUCUcUUG-CUuuuuCUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 228177 0.66 0.999999
Target:  5'- -gAGAGAAUGccaguaAGAGAcGACCAUCGCa- -3'
miRNA:   3'- cgUCUCUUGC------UUUUU-CUGGUAGUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.