miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 202193 0.74 0.990056
Target:  5'- ---cGGAACGGAGGAGGCUuUCGCCAc -3'
miRNA:   3'- cgucUCUUGCUUUUUCUGGuAGUGGU- -5'
30227 3' -46 NC_006273.1 + 201865 0.68 0.999966
Target:  5'- aCAGAGAGagaaGGGuuuucgggucacgcGAAGACCGcUCACCGg -3'
miRNA:   3'- cGUCUCUUg---CUU--------------UUUCUGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 198011 0.72 0.99702
Target:  5'- uGUGGAGGACGggGuGGAgCggGUCGCCGa -3'
miRNA:   3'- -CGUCUCUUGCuuUuUCUgG--UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 196861 0.72 0.998244
Target:  5'- gGCGGGGccGGCGAcgGGGACgaCGUCGCCGc -3'
miRNA:   3'- -CGUCUC--UUGCUuuUUCUG--GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 190380 0.71 0.999348
Target:  5'- cGCGGAGGGagGAGAGGGACgGgaacgaUCACCGc -3'
miRNA:   3'- -CGUCUCUUg-CUUUUUCUGgU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 187194 0.67 0.999994
Target:  5'- aGCAGAGAAUGucAAAAcGA-CAUUACCGc -3'
miRNA:   3'- -CGUCUCUUGCu-UUUU-CUgGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 186459 0.66 0.999998
Target:  5'- cGCAcGAGGAgGccGAGAGucgccuguacgacGCCAUCACCGa -3'
miRNA:   3'- -CGU-CUCUUgCu-UUUUC-------------UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 186283 0.68 0.999977
Target:  5'- gGCGGAGGugGAAAugaGCCGUC-CUg -3'
miRNA:   3'- -CGUCUCUugCUUUuucUGGUAGuGGu -5'
30227 3' -46 NC_006273.1 + 185412 0.66 0.999999
Target:  5'- cGCGGccGACGugguGGACCAgCACCGc -3'
miRNA:   3'- -CGUCucUUGCuuuuUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 179226 0.67 0.999996
Target:  5'- aCAGAGGGCGuucGGAcGACCuccgcgucgGUCGCCGc -3'
miRNA:   3'- cGUCUCUUGCu--UUUuCUGG---------UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 177261 0.66 0.999999
Target:  5'- gGCgAGGGAuagaGAAAAGGACaguaaaaCGUCGCCGc -3'
miRNA:   3'- -CG-UCUCUug--CUUUUUCUG-------GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 171338 0.79 0.918448
Target:  5'- aGCAGAGA--GGAGGAGGCCG-CGCCAc -3'
miRNA:   3'- -CGUCUCUugCUUUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 170933 0.67 0.999996
Target:  5'- -aAGGGAGUGGAGAGGGCCAgguugCACa- -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUGGUa----GUGgu -5'
30227 3' -46 NC_006273.1 + 170357 0.68 0.999983
Target:  5'- cGCGGAGcuguGCGGAucAAAGACCAaCAUg- -3'
miRNA:   3'- -CGUCUCu---UGCUU--UUUCUGGUaGUGgu -5'
30227 3' -46 NC_006273.1 + 169892 0.68 0.999977
Target:  5'- cGCuGAGGGggaGGAGGAGGCgGUgGCCAg -3'
miRNA:   3'- -CGuCUCUUg--CUUUUUCUGgUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 167890 0.71 0.998798
Target:  5'- -gGGAGAACau----GACCAUCGCCGc -3'
miRNA:   3'- cgUCUCUUGcuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 166585 0.67 0.999996
Target:  5'- aCAGGGccaGGAAAAGcaaccagccccGCCAUCGCCGc -3'
miRNA:   3'- cGUCUCuugCUUUUUC-----------UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 163823 0.68 0.999977
Target:  5'- aGCGGG--ACGAAAAAcACCGUCACg- -3'
miRNA:   3'- -CGUCUcuUGCUUUUUcUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 163117 0.66 0.999999
Target:  5'- -aGGAGGAUGAGGAGGGCUccggcugaggcggcGgaggCACCAc -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUGG--------------Ua---GUGGU- -5'
30227 3' -46 NC_006273.1 + 158341 0.68 0.999983
Target:  5'- aGCAGGGAGCGc--AAGGCCGagcgucguUCGCgCGg -3'
miRNA:   3'- -CGUCUCUUGCuuuUUCUGGU--------AGUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.