miRNA display CGI


Results 81 - 100 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 73308 0.68 0.999969
Target:  5'- uCGGAGAcgACGAuu--GGCCAUgACCGc -3'
miRNA:   3'- cGUCUCU--UGCUuuuuCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 73006 0.7 0.999793
Target:  5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3'
miRNA:   3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5'
30227 3' -46 NC_006273.1 + 72868 0.7 0.999736
Target:  5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3'
miRNA:   3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5'
30227 3' -46 NC_006273.1 + 72544 0.74 0.990954
Target:  5'- cGCGGAGGAUGAggacgaguaauugaGAAAGGCCAcCGCUu -3'
miRNA:   3'- -CGUCUCUUGCU--------------UUUUCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 71948 0.67 0.999991
Target:  5'- gGCGGAcauGCGAcugcuGGGGGGCCAaCGCCGg -3'
miRNA:   3'- -CGUCUcu-UGCU-----UUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 71641 0.77 0.961408
Target:  5'- -gGGAGGACGAGGAGGA-CGUCGCUg -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUgGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 69736 0.66 0.999999
Target:  5'- cGUAGGGGAacaGAGAccGGGCCGcggCACCGu -3'
miRNA:   3'- -CGUCUCUUg--CUUUu-UCUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 69458 0.7 0.999793
Target:  5'- gGCGGAGGACuc--AAGAacgUCGUCACCAc -3'
miRNA:   3'- -CGUCUCUUGcuuuUUCU---GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 69329 0.66 0.999998
Target:  5'- uGCGGuGGAUGAAGAAGAgCCAgaACUg -3'
miRNA:   3'- -CGUCuCUUGCUUUUUCU-GGUagUGGu -5'
30227 3' -46 NC_006273.1 + 65366 0.7 0.999736
Target:  5'- gGCGGGGGGaGAAAGAguuGugCAUCGCCc -3'
miRNA:   3'- -CGUCUCUUgCUUUUU---CugGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 64799 0.68 0.999959
Target:  5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3'
miRNA:   3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 62875 0.67 0.999996
Target:  5'- cUAGuguGGAUGAccuacGGGCCAUCGCCGa -3'
miRNA:   3'- cGUCu--CUUGCUuuu--UCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 62000 0.66 0.999999
Target:  5'- uGCAGAcccuGcGCGAGAuccAGACCGUaauaGCCGa -3'
miRNA:   3'- -CGUCU----CuUGCUUUu--UCUGGUAg---UGGU- -5'
30227 3' -46 NC_006273.1 + 61933 0.68 0.999959
Target:  5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3'
miRNA:   3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 59715 0.67 0.999994
Target:  5'- aGguGAcaGACGAuauGAGGCCAuaUCGCCGa -3'
miRNA:   3'- -CguCUc-UUGCUuu-UUCUGGU--AGUGGU- -5'
30227 3' -46 NC_006273.1 + 58975 0.68 0.999969
Target:  5'- gGCuGAGAuucGCG----GGAUCGUCACCAc -3'
miRNA:   3'- -CGuCUCU---UGCuuuuUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 53936 0.69 0.999875
Target:  5'- aGCAGuacacgucGAGCGucauGAGGACCAugUCGCCu -3'
miRNA:   3'- -CGUCu-------CUUGCuu--UUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 50312 0.71 0.999196
Target:  5'- gGCcGAGAACuau-GAGACCAcgUCGCCGg -3'
miRNA:   3'- -CGuCUCUUGcuuuUUCUGGU--AGUGGU- -5'
30227 3' -46 NC_006273.1 + 47622 0.68 0.999959
Target:  5'- cGUAGAuccGGAC--AGAGGACgGUCACCAu -3'
miRNA:   3'- -CGUCU---CUUGcuUUUUCUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 47322 0.74 0.992451
Target:  5'- -uGGuGGACGAGAcGAGACCcgCGCCGc -3'
miRNA:   3'- cgUCuCUUGCUUU-UUCUGGuaGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.