miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 208662 0.7 0.999736
Target:  5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3'
miRNA:   3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 34868 0.73 0.995863
Target:  5'- aGCGGAucGCGAAAuAGGCgcuCGUCACCGu -3'
miRNA:   3'- -CGUCUcuUGCUUUuUCUG---GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 196861 0.72 0.998244
Target:  5'- gGCGGGGccGGCGAcgGGGACgaCGUCGCCGc -3'
miRNA:   3'- -CGUCUC--UUGCUuuUUCUG--GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 204575 0.71 0.998544
Target:  5'- --cGAGGACGcAGAcGACCGUCGCUg -3'
miRNA:   3'- cguCUCUUGCuUUUuCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 32283 0.71 0.998544
Target:  5'- -----cGACGAGcgGGACCGUCACCGu -3'
miRNA:   3'- cgucucUUGCUUuuUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 167890 0.71 0.998798
Target:  5'- -gGGAGAACau----GACCAUCGCCGc -3'
miRNA:   3'- cgUCUCUUGcuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 216034 0.71 0.999196
Target:  5'- gGUAGGGAGCcuGGGAGuCCAUCGCUu -3'
miRNA:   3'- -CGUCUCUUGcuUUUUCuGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 105177 0.71 0.999348
Target:  5'- cGC-GAGGACGggGAA-ACgGUCGCCGc -3'
miRNA:   3'- -CGuCUCUUGCuuUUUcUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 22697 0.7 0.999475
Target:  5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3'
miRNA:   3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5'
30227 3' -46 NC_006273.1 + 212057 0.73 0.994363
Target:  5'- cGCGGGGGugGggGcgcccAGGCCGUC-CCGg -3'
miRNA:   3'- -CGUCUCUugCuuUu----UCUGGUAGuGGU- -5'
30227 3' -46 NC_006273.1 + 147104 0.74 0.991318
Target:  5'- uGCuGAGAAUGAAGaggaaggcuguGAGGCUGUCGCCc -3'
miRNA:   3'- -CGuCUCUUGCUUU-----------UUCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 202193 0.74 0.990056
Target:  5'- ---cGGAACGGAGGAGGCUuUCGCCAc -3'
miRNA:   3'- cgucUCUUGCUUUUUCUGGuAGUGGU- -5'
30227 3' -46 NC_006273.1 + 171338 0.79 0.918448
Target:  5'- aGCAGAGA--GGAGGAGGCCG-CGCCAc -3'
miRNA:   3'- -CGUCUCUugCUUUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 112389 0.78 0.939609
Target:  5'- aGCAGu--GCGAgcucgacGAAGGACCGUCGCCGc -3'
miRNA:   3'- -CGUCucuUGCU-------UUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 120134 0.78 0.944865
Target:  5'- aGCAGAGAACc--GAGGGCCGgcUCACCu -3'
miRNA:   3'- -CGUCUCUUGcuuUUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 34048 0.77 0.953633
Target:  5'- cGCGGAGGGCGAcaaAGAGGAgUgGUCGCCGc -3'
miRNA:   3'- -CGUCUCUUGCU---UUUUCU-GgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 71641 0.77 0.961408
Target:  5'- -gGGAGGACGAGGAGGA-CGUCGCUg -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUgGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 141623 0.76 0.964935
Target:  5'- uGCAGcccuaGGAACaGGGAAGACUGUCGCCAc -3'
miRNA:   3'- -CGUC-----UCUUGcUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 20899 0.76 0.971299
Target:  5'- -aGGAGAACGAGGAagguGGACCGugugaaUCGCCGc -3'
miRNA:   3'- cgUCUCUUGCUUUU----UCUGGU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 99160 0.75 0.981462
Target:  5'- cGguGGGGAaaaGGAGGGGGCCGUCAUUAa -3'
miRNA:   3'- -CguCUCUUg--CUUUUUCUGGUAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.