miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 71641 0.77 0.961408
Target:  5'- -gGGAGGACGAGGAGGA-CGUCGCUg -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUgGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 34048 0.77 0.953633
Target:  5'- cGCGGAGGGCGAcaaAGAGGAgUgGUCGCCGc -3'
miRNA:   3'- -CGUCUCUUGCU---UUUUCU-GgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 120134 0.78 0.944865
Target:  5'- aGCAGAGAACc--GAGGGCCGgcUCACCu -3'
miRNA:   3'- -CGUCUCUUGcuuUUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 112389 0.78 0.939609
Target:  5'- aGCAGu--GCGAgcucgacGAAGGACCGUCGCCGc -3'
miRNA:   3'- -CGUCucuUGCU-------UUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 171338 0.79 0.918448
Target:  5'- aGCAGAGA--GGAGGAGGCCG-CGCCAc -3'
miRNA:   3'- -CGUCUCUugCUUUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 204575 0.71 0.998544
Target:  5'- --cGAGGACGcAGAcGACCGUCGCUg -3'
miRNA:   3'- cguCUCUUGCuUUUuCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 32283 0.71 0.998544
Target:  5'- -----cGACGAGcgGGACCGUCACCGu -3'
miRNA:   3'- cgucucUUGCUUuuUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 64799 0.68 0.999959
Target:  5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3'
miRNA:   3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 88647 0.68 0.999945
Target:  5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3'
miRNA:   3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 208022 0.69 0.999927
Target:  5'- cCAGAGAAgGGAGGGGGCaaaaACCAg -3'
miRNA:   3'- cGUCUCUUgCUUUUUCUGguagUGGU- -5'
30227 3' -46 NC_006273.1 + 105355 0.69 0.999875
Target:  5'- -aGGAGGAUGAAGu-GACCgugauGUCGCCGu -3'
miRNA:   3'- cgUCUCUUGCUUUuuCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 53936 0.69 0.999875
Target:  5'- aGCAGuacacgucGAGCGucauGAGGACCAugUCGCCu -3'
miRNA:   3'- -CGUCu-------CUUGCuu--UUUCUGGU--AGUGGu -5'
30227 3' -46 NC_006273.1 + 130763 0.7 0.999793
Target:  5'- cGCuccGAGGACGucgc-GGCUAUCACCGu -3'
miRNA:   3'- -CGu--CUCUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 73006 0.7 0.999793
Target:  5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3'
miRNA:   3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5'
30227 3' -46 NC_006273.1 + 69458 0.7 0.999793
Target:  5'- gGCGGAGGACuc--AAGAacgUCGUCACCAc -3'
miRNA:   3'- -CGUCUCUUGcuuuUUCU---GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 208662 0.7 0.999736
Target:  5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3'
miRNA:   3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 22697 0.7 0.999475
Target:  5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3'
miRNA:   3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5'
30227 3' -46 NC_006273.1 + 105177 0.71 0.999348
Target:  5'- cGC-GAGGACGggGAA-ACgGUCGCCGc -3'
miRNA:   3'- -CGuCUCUUGCuuUUUcUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 216034 0.71 0.999196
Target:  5'- gGUAGGGAGCcuGGGAGuCCAUCGCUu -3'
miRNA:   3'- -CGUCUCUUGcuUUUUCuGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 167890 0.71 0.998798
Target:  5'- -gGGAGAACau----GACCAUCGCCGc -3'
miRNA:   3'- cgUCUCUUGcuuuuuCUGGUAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.