Results 61 - 80 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30227 | 3' | -46 | NC_006273.1 | + | 22697 | 0.7 | 0.999475 |
Target: 5'- -uGGGGAGCGcgcacAAAGGACCGUCaggcGCCGg -3' miRNA: 3'- cgUCUCUUGCu----UUUUCUGGUAG----UGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 208662 | 0.7 | 0.999736 |
Target: 5'- aGUAGAagccaGGACGcu---GACCAUCACCGu -3' miRNA: 3'- -CGUCU-----CUUGCuuuuuCUGGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 69458 | 0.7 | 0.999793 |
Target: 5'- gGCGGAGGACuc--AAGAacgUCGUCACCAc -3' miRNA: 3'- -CGUCUCUUGcuuuUUCU---GGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 73006 | 0.7 | 0.999793 |
Target: 5'- cGCAGGaAGCGuugguAGAGACgGUCGCCc -3' miRNA: 3'- -CGUCUcUUGCuu---UUUCUGgUAGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 118958 | 0.71 | 0.999014 |
Target: 5'- cGUAGcGGGCGAGAAagccgcccacguAGACCggCGCCAc -3' miRNA: 3'- -CGUCuCUUGCUUUU------------UCUGGuaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 50312 | 0.71 | 0.999196 |
Target: 5'- gGCcGAGAACuau-GAGACCAcgUCGCCGg -3' miRNA: 3'- -CGuCUCUUGcuuuUUCUGGU--AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 190380 | 0.71 | 0.999348 |
Target: 5'- cGCGGAGGGagGAGAGGGACgGgaacgaUCACCGc -3' miRNA: 3'- -CGUCUCUUg-CUUUUUCUGgU------AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 205417 | 0.7 | 0.999475 |
Target: 5'- cCGGAGGACGu-GAAGGCUuggaGUCACUAc -3' miRNA: 3'- cGUCUCUUGCuuUUUCUGG----UAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 7408 | 0.7 | 0.99958 |
Target: 5'- cGCuGAGAugGAAccGAAGucgcuGCCGuUCGCCAg -3' miRNA: 3'- -CGuCUCUugCUU--UUUC-----UGGU-AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 13491 | 0.7 | 0.99958 |
Target: 5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3' miRNA: 3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 72868 | 0.7 | 0.999736 |
Target: 5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3' miRNA: 3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 82300 | 0.71 | 0.998798 |
Target: 5'- cGCGGcguGGAUGAc-GAGGCCGUCAUCGa -3' miRNA: 3'- -CGUCu--CUUGCUuuUUCUGGUAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 120055 | 0.72 | 0.998244 |
Target: 5'- uGCAGAGGACGGAGGAacuuucGGCCGaaaCAUCGa -3' miRNA: 3'- -CGUCUCUUGCUUUUU------CUGGUa--GUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 198011 | 0.72 | 0.99702 |
Target: 5'- uGUGGAGGACGggGuGGAgCggGUCGCCGa -3' miRNA: 3'- -CGUCUCUUGCuuUuUCUgG--UAGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 213960 | 0.73 | 0.99516 |
Target: 5'- aGCAGAGGugGAcucggauAGAGACCucUgGCCAg -3' miRNA: 3'- -CGUCUCUugCUu------UUUCUGGu-AgUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 83833 | 0.73 | 0.993463 |
Target: 5'- uCAGGGGGCcGAAGAGGCCAUCGuauacuCCAa -3' miRNA: 3'- cGUCUCUUGcUUUUUCUGGUAGU------GGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 47322 | 0.74 | 0.992451 |
Target: 5'- -uGGuGGACGAGAcGAGACCcgCGCCGc -3' miRNA: 3'- cgUCuCUUGCUUU-UUCUGGuaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 72544 | 0.74 | 0.990954 |
Target: 5'- cGCGGAGGAUGAggacgaguaauugaGAAAGGCCAcCGCUu -3' miRNA: 3'- -CGUCUCUUGCU--------------UUUUCUGGUaGUGGu -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 137676 | 0.8 | 0.885586 |
Target: 5'- cGUAGAGAACGAuggAGGAcGACCAaCACCGa -3' miRNA: 3'- -CGUCUCUUGCU---UUUU-CUGGUaGUGGU- -5' |
|||||||
30227 | 3' | -46 | NC_006273.1 | + | 225668 | 0.66 | 0.999999 |
Target: 5'- cGCAGAaAGCaGAu---GACCAgugCACCAa -3' miRNA: 3'- -CGUCUcUUG-CUuuuuCUGGUa--GUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home