miRNA display CGI


Results 101 - 120 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 198011 0.72 0.99702
Target:  5'- uGUGGAGGACGggGuGGAgCggGUCGCCGa -3'
miRNA:   3'- -CGUCUCUUGCuuUuUCUgG--UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 213960 0.73 0.99516
Target:  5'- aGCAGAGGugGAcucggauAGAGACCucUgGCCAg -3'
miRNA:   3'- -CGUCUCUugCUu------UUUCUGGu-AgUGGU- -5'
30227 3' -46 NC_006273.1 + 83833 0.73 0.993463
Target:  5'- uCAGGGGGCcGAAGAGGCCAUCGuauacuCCAa -3'
miRNA:   3'- cGUCUCUUGcUUUUUCUGGUAGU------GGU- -5'
30227 3' -46 NC_006273.1 + 47322 0.74 0.992451
Target:  5'- -uGGuGGACGAGAcGAGACCcgCGCCGc -3'
miRNA:   3'- cgUCuCUUGCUUU-UUCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 72544 0.74 0.990954
Target:  5'- cGCGGAGGAUGAggacgaguaauugaGAAAGGCCAcCGCUu -3'
miRNA:   3'- -CGUCUCUUGCU--------------UUUUCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 137676 0.8 0.885586
Target:  5'- cGUAGAGAACGAuggAGGAcGACCAaCACCGa -3'
miRNA:   3'- -CGUCUCUUGCU---UUUU-CUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 7408 0.7 0.99958
Target:  5'- cGCuGAGAugGAAccGAAGucgcuGCCGuUCGCCAg -3'
miRNA:   3'- -CGuCUCUugCUU--UUUC-----UGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 13491 0.7 0.99958
Target:  5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3'
miRNA:   3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 107458 0.69 0.999927
Target:  5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3'
miRNA:   3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 139568 0.69 0.999927
Target:  5'- gGCAuGAcGAGCGAGAgaaccgucGAGAaaGUCACCAa -3'
miRNA:   3'- -CGU-CU-CUUGCUUU--------UUCUggUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 42385 0.69 0.999904
Target:  5'- gGCGGuGAGCac--GAGGCCAUCcCCAa -3'
miRNA:   3'- -CGUCuCUUGcuuuUUCUGGUAGuGGU- -5'
30227 3' -46 NC_006273.1 + 85231 0.69 0.999904
Target:  5'- -aAGAacaaGACGGAGGAGAcaCCGUCGCCGu -3'
miRNA:   3'- cgUCUc---UUGCUUUUUCU--GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 82065 0.69 0.999875
Target:  5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3'
miRNA:   3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 83491 0.69 0.999875
Target:  5'- cGCAGGuGGACGAGAuccAGGACCugcgCACg- -3'
miRNA:   3'- -CGUCU-CUUGCUUU---UUCUGGua--GUGgu -5'
30227 3' -46 NC_006273.1 + 233703 0.7 0.999793
Target:  5'- cGCGGGGGACGggGuAGccgagcgcugcGCCcUCGCCu -3'
miRNA:   3'- -CGUCUCUUGCuuUuUC-----------UGGuAGUGGu -5'
30227 3' -46 NC_006273.1 + 65366 0.7 0.999736
Target:  5'- gGCGGGGGGaGAAAGAguuGugCAUCGCCc -3'
miRNA:   3'- -CGUCUCUUgCUUUUU---CugGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 31768 0.7 0.999736
Target:  5'- ----cGGACGAAAGugGGGCCGUCugCAc -3'
miRNA:   3'- cgucuCUUGCUUUU--UCUGGUAGugGU- -5'
30227 3' -46 NC_006273.1 + 14545 0.7 0.999736
Target:  5'- aCGGAGGACGGAAucauuACCGcCGCCAa -3'
miRNA:   3'- cGUCUCUUGCUUUuuc--UGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 212086 0.7 0.999736
Target:  5'- aCAGAGuGAUGGcuGAGACCAacacgaugucucUCGCCAa -3'
miRNA:   3'- cGUCUC-UUGCUuuUUCUGGU------------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 72868 0.7 0.999736
Target:  5'- aGCAccGuGAcGCGAGGAGGGCCGggacUCACCGu -3'
miRNA:   3'- -CGU--CuCU-UGCUUUUUCUGGU----AGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.