miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 82065 0.69 0.999875
Target:  5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3'
miRNA:   3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 65366 0.7 0.999736
Target:  5'- gGCGGGGGGaGAAAGAguuGugCAUCGCCc -3'
miRNA:   3'- -CGUCUCUUgCUUUUU---CugGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 50312 0.71 0.999196
Target:  5'- gGCcGAGAACuau-GAGACCAcgUCGCCGg -3'
miRNA:   3'- -CGuCUCUUGcuuuUUCUGGU--AGUGGU- -5'
30227 3' -46 NC_006273.1 + 47322 0.74 0.992451
Target:  5'- -uGGuGGACGAGAcGAGACCcgCGCCGc -3'
miRNA:   3'- cgUCuCUUGCUUU-UUCUGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 203282 0.68 0.999983
Target:  5'- aGCAGGGuGACGGAGGAGACacccguguguUCgACCGg -3'
miRNA:   3'- -CGUCUC-UUGCUUUUUCUGgu--------AG-UGGU- -5'
30227 3' -46 NC_006273.1 + 47622 0.68 0.999959
Target:  5'- cGUAGAuccGGAC--AGAGGACgGUCACCAu -3'
miRNA:   3'- -CGUCU---CUUGcuUUUUCUGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 14545 0.7 0.999736
Target:  5'- aCGGAGGACGGAAucauuACCGcCGCCAa -3'
miRNA:   3'- cGUCUCUUGCUUUuuc--UGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 72544 0.74 0.990954
Target:  5'- cGCGGAGGAUGAggacgaguaauugaGAAAGGCCAcCGCUu -3'
miRNA:   3'- -CGUCUCUUGCU--------------UUUUCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 107458 0.69 0.999927
Target:  5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3'
miRNA:   3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 137676 0.8 0.885586
Target:  5'- cGUAGAGAACGAuggAGGAcGACCAaCACCGa -3'
miRNA:   3'- -CGUCUCUUGCU---UUUU-CUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 31768 0.7 0.999736
Target:  5'- ----cGGACGAAAGugGGGCCGUCugCAc -3'
miRNA:   3'- cgucuCUUGCUUUU--UCUGGUAGugGU- -5'
30227 3' -46 NC_006273.1 + 85231 0.69 0.999904
Target:  5'- -aAGAacaaGACGGAGGAGAcaCCGUCGCCGu -3'
miRNA:   3'- cgUCUc---UUGCUUUUUCU--GGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 13491 0.7 0.99958
Target:  5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3'
miRNA:   3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 190380 0.71 0.999348
Target:  5'- cGCGGAGGGagGAGAGGGACgGgaacgaUCACCGc -3'
miRNA:   3'- -CGUCUCUUg-CUUUUUCUGgU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 120055 0.72 0.998244
Target:  5'- uGCAGAGGACGGAGGAacuuucGGCCGaaaCAUCGa -3'
miRNA:   3'- -CGUCUCUUGCUUUUU------CUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 83833 0.73 0.993463
Target:  5'- uCAGGGGGCcGAAGAGGCCAUCGuauacuCCAa -3'
miRNA:   3'- cGUCUCUUGcUUUUUCUGGUAGU------GGU- -5'
30227 3' -46 NC_006273.1 + 115745 0.67 0.999991
Target:  5'- aCGGAGAcggACGAAcGAGGCCAaggaucaugcuguuUCugCAu -3'
miRNA:   3'- cGUCUCU---UGCUUuUUCUGGU--------------AGugGU- -5'
30227 3' -46 NC_006273.1 + 170357 0.68 0.999983
Target:  5'- cGCGGAGcuguGCGGAucAAAGACCAaCAUg- -3'
miRNA:   3'- -CGUCUCu---UGCUU--UUUCUGGUaGUGgu -5'
30227 3' -46 NC_006273.1 + 169892 0.68 0.999977
Target:  5'- cGCuGAGGGggaGGAGGAGGCgGUgGCCAg -3'
miRNA:   3'- -CGuCUCUUg--CUUUUUCUGgUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 58975 0.68 0.999969
Target:  5'- gGCuGAGAuucGCG----GGAUCGUCACCAc -3'
miRNA:   3'- -CGuCUCU---UGCuuuuUCUGGUAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.