miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 72544 0.74 0.990954
Target:  5'- cGCGGAGGAUGAggacgaguaauugaGAAAGGCCAcCGCUu -3'
miRNA:   3'- -CGUCUCUUGCU--------------UUUUCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 163823 0.68 0.999977
Target:  5'- aGCGGG--ACGAAAAAcACCGUCACg- -3'
miRNA:   3'- -CGUCUcuUGCUUUUUcUGGUAGUGgu -5'
30227 3' -46 NC_006273.1 + 137676 0.8 0.885586
Target:  5'- cGUAGAGAACGAuggAGGAcGACCAaCACCGa -3'
miRNA:   3'- -CGUCUCUUGCU---UUUU-CUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 74539 0.86 0.585899
Target:  5'- cCAGAGA--GGAAGAGACCAUCACCGa -3'
miRNA:   3'- cGUCUCUugCUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 62875 0.67 0.999996
Target:  5'- cUAGuguGGAUGAccuacGGGCCAUCGCCGa -3'
miRNA:   3'- cGUCu--CUUGCUuuu--UCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 41190 0.66 0.999999
Target:  5'- gGCGG-GGACGggGAcggGGGCCuuUCGCg- -3'
miRNA:   3'- -CGUCuCUUGCuuUU---UCUGGu-AGUGgu -5'
30227 3' -46 NC_006273.1 + 83833 0.73 0.993463
Target:  5'- uCAGGGGGCcGAAGAGGCCAUCGuauacuCCAa -3'
miRNA:   3'- cGUCUCUUGcUUUUUCUGGUAGU------GGU- -5'
30227 3' -46 NC_006273.1 + 71948 0.67 0.999991
Target:  5'- gGCGGAcauGCGAcugcuGGGGGGCCAaCGCCGg -3'
miRNA:   3'- -CGUCUcu-UGCU-----UUUUCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 115745 0.67 0.999991
Target:  5'- aCGGAGAcggACGAAcGAGGCCAaggaucaugcuguuUCugCAu -3'
miRNA:   3'- cGUCUCU---UGCUUuUUCUGGU--------------AGugGU- -5'
30227 3' -46 NC_006273.1 + 170357 0.68 0.999983
Target:  5'- cGCGGAGcuguGCGGAucAAAGACCAaCAUg- -3'
miRNA:   3'- -CGUCUCu---UGCUU--UUUCUGGUaGUGgu -5'
30227 3' -46 NC_006273.1 + 136678 0.68 0.999969
Target:  5'- --uGAGGACGAGGAGacgacgaccGGCCGgUCGCCGc -3'
miRNA:   3'- cguCUCUUGCUUUUU---------CUGGU-AGUGGU- -5'
30227 3' -46 NC_006273.1 + 84023 0.67 0.999996
Target:  5'- uGCAGcc-GCGAGAAGGcgcGCCggCGCCAa -3'
miRNA:   3'- -CGUCucuUGCUUUUUC---UGGuaGUGGU- -5'
30227 3' -46 NC_006273.1 + 107458 0.69 0.999927
Target:  5'- aCGGuGAACGAAAugaagcAGGACUuugugGUCACCGa -3'
miRNA:   3'- cGUCuCUUGCUUU------UUCUGG-----UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 82065 0.69 0.999875
Target:  5'- gGCAGaAGAggagACGGAGGAGugaACgGUCGCCGu -3'
miRNA:   3'- -CGUC-UCU----UGCUUUUUC---UGgUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 65366 0.7 0.999736
Target:  5'- gGCGGGGGGaGAAAGAguuGugCAUCGCCc -3'
miRNA:   3'- -CGUCUCUUgCUUUUU---CugGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 13491 0.7 0.99958
Target:  5'- uGCuGAacguGAUGAAAGAGGCCGUCGCgGa -3'
miRNA:   3'- -CGuCUc---UUGCUUUUUCUGGUAGUGgU- -5'
30227 3' -46 NC_006273.1 + 190380 0.71 0.999348
Target:  5'- cGCGGAGGGagGAGAGGGACgGgaacgaUCACCGc -3'
miRNA:   3'- -CGUCUCUUg-CUUUUUCUGgU------AGUGGU- -5'
30227 3' -46 NC_006273.1 + 120055 0.72 0.998244
Target:  5'- uGCAGAGGACGGAGGAacuuucGGCCGaaaCAUCGa -3'
miRNA:   3'- -CGUCUCUUGCUUUUU------CUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 59715 0.67 0.999994
Target:  5'- aGguGAcaGACGAuauGAGGCCAuaUCGCCGa -3'
miRNA:   3'- -CguCUc-UUGCUuu-UUCUGGU--AGUGGU- -5'
30227 3' -46 NC_006273.1 + 61933 0.68 0.999959
Target:  5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3'
miRNA:   3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.