miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 3' -46 NC_006273.1 + 208022 0.69 0.999927
Target:  5'- cCAGAGAAgGGAGGGGGCaaaaACCAg -3'
miRNA:   3'- cGUCUCUUgCUUUUUCUGguagUGGU- -5'
30227 3' -46 NC_006273.1 + 102715 0.68 0.999959
Target:  5'- aCAGAGGACGuuguuuuuugGAAAAcGCCGUUACCc -3'
miRNA:   3'- cGUCUCUUGC----------UUUUUcUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 88647 0.68 0.999945
Target:  5'- gGCGGGcGACGAGAAacgcGGACUAgCACCu -3'
miRNA:   3'- -CGUCUcUUGCUUUU----UCUGGUaGUGGu -5'
30227 3' -46 NC_006273.1 + 163117 0.66 0.999999
Target:  5'- -aGGAGGAUGAGGAGGGCUccggcugaggcggcGgaggCACCAc -3'
miRNA:   3'- cgUCUCUUGCUUUUUCUGG--------------Ua---GUGGU- -5'
30227 3' -46 NC_006273.1 + 141623 0.76 0.964935
Target:  5'- uGCAGcccuaGGAACaGGGAAGACUGUCGCCAc -3'
miRNA:   3'- -CGUC-----UCUUGcUUUUUCUGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 34868 0.73 0.995863
Target:  5'- aGCGGAucGCGAAAuAGGCgcuCGUCACCGu -3'
miRNA:   3'- -CGUCUcuUGCUUUuUCUG---GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 196861 0.72 0.998244
Target:  5'- gGCGGGGccGGCGAcgGGGACgaCGUCGCCGc -3'
miRNA:   3'- -CGUCUC--UUGCUuuUUCUG--GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 204575 0.71 0.998544
Target:  5'- --cGAGGACGcAGAcGACCGUCGCUg -3'
miRNA:   3'- cguCUCUUGCuUUUuCUGGUAGUGGu -5'
30227 3' -46 NC_006273.1 + 61933 0.68 0.999959
Target:  5'- gGCGGAG-ACGA---GGACCgGUUGCCGu -3'
miRNA:   3'- -CGUCUCuUGCUuuuUCUGG-UAGUGGU- -5'
30227 3' -46 NC_006273.1 + 3437 0.66 0.999997
Target:  5'- uGCAGAacggcGACGGAGAGGAgCGUguCCGc -3'
miRNA:   3'- -CGUCUc----UUGCUUUUUCUgGUAguGGU- -5'
30227 3' -46 NC_006273.1 + 36944 0.66 0.999997
Target:  5'- gGCAGGuGGCGugcGAGACCGU-GCCAa -3'
miRNA:   3'- -CGUCUcUUGCuuuUUCUGGUAgUGGU- -5'
30227 3' -46 NC_006273.1 + 86888 0.66 0.999998
Target:  5'- aCGGAGGACGGuacgguAGAAGGCCG-C-CCGg -3'
miRNA:   3'- cGUCUCUUGCU------UUUUCUGGUaGuGGU- -5'
30227 3' -46 NC_006273.1 + 213647 0.66 0.999998
Target:  5'- gGCAGcugagaucuaccgccAGGGCGAGAAGaGCCG-CGCCGa -3'
miRNA:   3'- -CGUC---------------UCUUGCUUUUUcUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 69736 0.66 0.999999
Target:  5'- cGUAGGGGAacaGAGAccGGGCCGcggCACCGu -3'
miRNA:   3'- -CGUCUCUUg--CUUUu-UCUGGUa--GUGGU- -5'
30227 3' -46 NC_006273.1 + 143839 0.66 0.999999
Target:  5'- gGCGGGGAAaauacuGAGGcgccGCCAUCAUCAu -3'
miRNA:   3'- -CGUCUCUUgcuu--UUUC----UGGUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 229081 0.66 0.999999
Target:  5'- cGCGGAGAGCaaguucaccugguGGAAAcGACUG-CGCCAc -3'
miRNA:   3'- -CGUCUCUUG-------------CUUUUuCUGGUaGUGGU- -5'
30227 3' -46 NC_006273.1 + 177261 0.66 0.999999
Target:  5'- gGCgAGGGAuagaGAAAAGGACaguaaaaCGUCGCCGc -3'
miRNA:   3'- -CG-UCUCUug--CUUUUUCUG-------GUAGUGGU- -5'
30227 3' -46 NC_006273.1 + 62000 0.66 0.999999
Target:  5'- uGCAGAcccuGcGCGAGAuccAGACCGUaauaGCCGa -3'
miRNA:   3'- -CGUCU----CuUGCUUUu--UCUGGUAg---UGGU- -5'
30227 3' -46 NC_006273.1 + 109590 0.66 0.999999
Target:  5'- uCGGAGAcggucagcGCGGAGAAGGau-UCGCCGa -3'
miRNA:   3'- cGUCUCU--------UGCUUUUUCUgguAGUGGU- -5'
30227 3' -46 NC_006273.1 + 64799 0.68 0.999959
Target:  5'- aCAGAcuGGGCGAcGAAGugCcgCGCCGc -3'
miRNA:   3'- cGUCU--CUUGCUuUUUCugGuaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.