miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 5' -53 NC_006273.1 + 73944 0.66 0.994571
Target:  5'- -cCGGACCGccaacgacGUcGACGCGgCUUUCUUg -3'
miRNA:   3'- cuGUCUGGC--------UA-CUGCGCgGAAAGAGg -5'
30227 5' -53 NC_006273.1 + 74375 0.66 0.994571
Target:  5'- uACAGAuaaggccggcgUCGGUGACGCGCag--CUCg -3'
miRNA:   3'- cUGUCU-----------GGCUACUGCGCGgaaaGAGg -5'
30227 5' -53 NC_006273.1 + 90819 0.66 0.993747
Target:  5'- aGCAGACCGAggccGuCGCGCaccggCUCg -3'
miRNA:   3'- cUGUCUGGCUa---CuGCGCGgaaa-GAGg -5'
30227 5' -53 NC_006273.1 + 167540 0.66 0.993747
Target:  5'- -uCGGugCgGGUGACaGCGCCg--CUCUa -3'
miRNA:   3'- cuGUCugG-CUACUG-CGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 188052 0.66 0.993747
Target:  5'- uGACAGcGCCGgcGGCGCggGUCUcgUCUCg -3'
miRNA:   3'- -CUGUC-UGGCuaCUGCG--CGGAa-AGAGg -5'
30227 5' -53 NC_006273.1 + 99324 0.66 0.993747
Target:  5'- --gAGGCCGGUG-CGuCGuCCUcaUCUCCg -3'
miRNA:   3'- cugUCUGGCUACuGC-GC-GGAa-AGAGG- -5'
30227 5' -53 NC_006273.1 + 143156 0.66 0.992826
Target:  5'- aGACGGGCac--GGCGCGCCgca-UCCc -3'
miRNA:   3'- -CUGUCUGgcuaCUGCGCGGaaagAGG- -5'
30227 5' -53 NC_006273.1 + 154278 0.66 0.992826
Target:  5'- ----cGCCGAgaUGACGCGgCUUUUUCUc -3'
miRNA:   3'- cugucUGGCU--ACUGCGCgGAAAGAGG- -5'
30227 5' -53 NC_006273.1 + 94629 0.66 0.992826
Target:  5'- cGACccGGCCuGcUGACGCGCUcgUCUCg -3'
miRNA:   3'- -CUGu-CUGG-CuACUGCGCGGaaAGAGg -5'
30227 5' -53 NC_006273.1 + 204790 0.66 0.992826
Target:  5'- uGGCGGcGCCGGUG-C-CGCCggUCUCg -3'
miRNA:   3'- -CUGUC-UGGCUACuGcGCGGaaAGAGg -5'
30227 5' -53 NC_006273.1 + 41122 0.66 0.9918
Target:  5'- cGACGGAgCCGGUGuccgaggaguCGuCGUCUUcCUCCu -3'
miRNA:   3'- -CUGUCU-GGCUACu---------GC-GCGGAAaGAGG- -5'
30227 5' -53 NC_006273.1 + 180279 0.66 0.9918
Target:  5'- gGugAG-CCGcgGACGCcGUCgguaccgUCUCCa -3'
miRNA:   3'- -CugUCuGGCuaCUGCG-CGGaa-----AGAGG- -5'
30227 5' -53 NC_006273.1 + 12543 0.66 0.99066
Target:  5'- -cCAGGCgaGAUGACGCGuCCguugcugCUCUg -3'
miRNA:   3'- cuGUCUGg-CUACUGCGC-GGaaa----GAGG- -5'
30227 5' -53 NC_006273.1 + 141064 0.66 0.99066
Target:  5'- gGACGGACCGgcGcCGgGCCUcgg-CCg -3'
miRNA:   3'- -CUGUCUGGCuaCuGCgCGGAaagaGG- -5'
30227 5' -53 NC_006273.1 + 26678 0.66 0.99066
Target:  5'- aGCucuGugUGGcgUGACGCGCUUUUCaccUCCa -3'
miRNA:   3'- cUGu--CugGCU--ACUGCGCGGAAAG---AGG- -5'
30227 5' -53 NC_006273.1 + 30138 0.66 0.9894
Target:  5'- -cCAGAUCGcucauGUGACGCGCCgagUCa-- -3'
miRNA:   3'- cuGUCUGGC-----UACUGCGCGGaa-AGagg -5'
30227 5' -53 NC_006273.1 + 53646 0.66 0.9894
Target:  5'- -cCAGACCGAacgUGGCGgGUCgcagCUUCa -3'
miRNA:   3'- cuGUCUGGCU---ACUGCgCGGaaa-GAGG- -5'
30227 5' -53 NC_006273.1 + 196388 0.67 0.988011
Target:  5'- gGACGGACUGuaccUGGCgcuggGCGCCgggUUCCg -3'
miRNA:   3'- -CUGUCUGGCu---ACUG-----CGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 195972 0.67 0.988011
Target:  5'- cGCGGGCCGccGG-GCGCCc--CUCCg -3'
miRNA:   3'- cUGUCUGGCuaCUgCGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 1079 0.67 0.988011
Target:  5'- cGCGGGCCGccGG-GCGCCc--CUCCg -3'
miRNA:   3'- cUGUCUGGCuaCUgCGCGGaaaGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.