miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 5' -53 NC_006273.1 + 212786 1.13 0.005005
Target:  5'- cGACAGACCGAUGACGCGCCUUUCUCCg -3'
miRNA:   3'- -CUGUCUGGCUACUGCGCGGAAAGAGG- -5'
30227 5' -53 NC_006273.1 + 115907 0.76 0.68404
Target:  5'- cGGCAGGCCGGUGugGCGCUg--Ca-- -3'
miRNA:   3'- -CUGUCUGGCUACugCGCGGaaaGagg -5'
30227 5' -53 NC_006273.1 + 134510 0.76 0.68404
Target:  5'- gGACAcGCCG-UGGCGuCGCCcUUCUCCg -3'
miRNA:   3'- -CUGUcUGGCuACUGC-GCGGaAAGAGG- -5'
30227 5' -53 NC_006273.1 + 92213 0.75 0.746774
Target:  5'- aGACGGugCGAgcaguuggggaugcGGCGCGCCgugcccgUCUCCu -3'
miRNA:   3'- -CUGUCugGCUa-------------CUGCGCGGaa-----AGAGG- -5'
30227 5' -53 NC_006273.1 + 119459 0.74 0.798458
Target:  5'- cGGCGGACUGcUGACGCGCUUUgugCagcgCCa -3'
miRNA:   3'- -CUGUCUGGCuACUGCGCGGAAa--Ga---GG- -5'
30227 5' -53 NC_006273.1 + 34256 0.72 0.864016
Target:  5'- aGGCAGcgGCCGAUGAguuCGCGCUccucgggCUCCa -3'
miRNA:   3'- -CUGUC--UGGCUACU---GCGCGGaaa----GAGG- -5'
30227 5' -53 NC_006273.1 + 162422 0.72 0.8785
Target:  5'- cGGCAGGCCGAgcgggaggcggUGACGgCGCuCUUUCagCg -3'
miRNA:   3'- -CUGUCUGGCU-----------ACUGC-GCG-GAAAGagG- -5'
30227 5' -53 NC_006273.1 + 131094 0.72 0.8785
Target:  5'- gGACgAGGCCGA-GACGCGgCCg--CUCUa -3'
miRNA:   3'- -CUG-UCUGGCUaCUGCGC-GGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 177664 0.71 0.898614
Target:  5'- gGAUGGAUCGcaaGACGCGCCUcUCggagCCg -3'
miRNA:   3'- -CUGUCUGGCua-CUGCGCGGAaAGa---GG- -5'
30227 5' -53 NC_006273.1 + 72277 0.71 0.910902
Target:  5'- cGGCAGGUCGAUGACGCuGCCgaugaggCCg -3'
miRNA:   3'- -CUGUCUGGCUACUGCG-CGGaaaga--GG- -5'
30227 5' -53 NC_006273.1 + 178355 0.71 0.910902
Target:  5'- cGCGGGCCGcgGACGCcuCCUc-CUCCu -3'
miRNA:   3'- cUGUCUGGCuaCUGCGc-GGAaaGAGG- -5'
30227 5' -53 NC_006273.1 + 121730 0.7 0.927605
Target:  5'- --gAGACCGugaGACGCGCCUg---CCa -3'
miRNA:   3'- cugUCUGGCua-CUGCGCGGAaagaGG- -5'
30227 5' -53 NC_006273.1 + 110108 0.7 0.927605
Target:  5'- cGCGGGCCcg-GACGCGCCacgCUCg -3'
miRNA:   3'- cUGUCUGGcuaCUGCGCGGaaaGAGg -5'
30227 5' -53 NC_006273.1 + 185223 0.7 0.932708
Target:  5'- --aAGGCCGugccGcCGCGCCguagUUCUCCg -3'
miRNA:   3'- cugUCUGGCua--CuGCGCGGa---AAGAGG- -5'
30227 5' -53 NC_006273.1 + 70842 0.7 0.932708
Target:  5'- uGGCGGGCCGAccGcCGCGCC---CUCCc -3'
miRNA:   3'- -CUGUCUGGCUa-CuGCGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 141859 0.7 0.937578
Target:  5'- aACGGACUGAUGACGUaGCUcg-CUUCg -3'
miRNA:   3'- cUGUCUGGCUACUGCG-CGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 30664 0.7 0.937578
Target:  5'- cGCAGAUCGcagcgGGCGCGCCUcggggCUCg -3'
miRNA:   3'- cUGUCUGGCua---CUGCGCGGAaa---GAGg -5'
30227 5' -53 NC_006273.1 + 218218 0.7 0.946625
Target:  5'- gGAC-GACCGGcaUGGCGCGgCCgucgUUUCCu -3'
miRNA:   3'- -CUGuCUGGCU--ACUGCGC-GGaa--AGAGG- -5'
30227 5' -53 NC_006273.1 + 196841 0.69 0.958498
Target:  5'- cGACcuuuuGACCGcgGugGUGCCcgUCgUCCu -3'
miRNA:   3'- -CUGu----CUGGCuaCugCGCGGaaAG-AGG- -5'
30227 5' -53 NC_006273.1 + 57713 0.69 0.965321
Target:  5'- cGGCGGcuCCGAgaGGCGCGUCUUgcgaUCCa -3'
miRNA:   3'- -CUGUCu-GGCUa-CUGCGCGGAAag--AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.