miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 5' -53 NC_006273.1 + 1079 0.67 0.988011
Target:  5'- cGCGGGCCGccGG-GCGCCc--CUCCg -3'
miRNA:   3'- cUGUCUGGCuaCUgCGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 195972 0.67 0.988011
Target:  5'- cGCGGGCCGccGG-GCGCCc--CUCCg -3'
miRNA:   3'- cUGUCUGGCuaCUgCGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 46921 0.67 0.986485
Target:  5'- --gAGGCCGA-GGCGCGCUa---UCCg -3'
miRNA:   3'- cugUCUGGCUaCUGCGCGGaaagAGG- -5'
30227 5' -53 NC_006273.1 + 105845 0.67 0.986485
Target:  5'- cACAG-CCGAggcGGCGCggcgcagcgccgGCCaUUCUCCg -3'
miRNA:   3'- cUGUCuGGCUa--CUGCG------------CGGaAAGAGG- -5'
30227 5' -53 NC_006273.1 + 64038 0.67 0.984814
Target:  5'- cGGCGGuuUUGGUGGCGCGgCCUc-CUCCu -3'
miRNA:   3'- -CUGUCu-GGCUACUGCGC-GGAaaGAGG- -5'
30227 5' -53 NC_006273.1 + 163743 0.67 0.984814
Target:  5'- cGGCAGGCCGcAUcGuCGuCGUCUUcCUCCu -3'
miRNA:   3'- -CUGUCUGGC-UA-CuGC-GCGGAAaGAGG- -5'
30227 5' -53 NC_006273.1 + 148780 0.67 0.984814
Target:  5'- --gAGGCCGgcGGCgGCGCCgugcgUCUCa -3'
miRNA:   3'- cugUCUGGCuaCUG-CGCGGaa---AGAGg -5'
30227 5' -53 NC_006273.1 + 26904 0.67 0.984814
Target:  5'- uGCGGAggucggUCGAUGACGaUGUCgaUCUCCa -3'
miRNA:   3'- cUGUCU------GGCUACUGC-GCGGaaAGAGG- -5'
30227 5' -53 NC_006273.1 + 118010 0.67 0.984814
Target:  5'- aGAgGGugCGAcaugGACGcCGCCUcugccggCUCCg -3'
miRNA:   3'- -CUgUCugGCUa---CUGC-GCGGAaa-----GAGG- -5'
30227 5' -53 NC_006273.1 + 133623 0.67 0.981006
Target:  5'- -uCAGACCGcccGACGCGCCcaug-CCg -3'
miRNA:   3'- cuGUCUGGCua-CUGCGCGGaaagaGG- -5'
30227 5' -53 NC_006273.1 + 55339 0.67 0.981006
Target:  5'- uGCAcGCCGAaGACgGCGCCgcUCUCg -3'
miRNA:   3'- cUGUcUGGCUaCUG-CGCGGaaAGAGg -5'
30227 5' -53 NC_006273.1 + 69758 0.67 0.981006
Target:  5'- cGCGGcACCG-UGcUGCGUCUgagUCUCCa -3'
miRNA:   3'- cUGUC-UGGCuACuGCGCGGAa--AGAGG- -5'
30227 5' -53 NC_006273.1 + 130286 0.67 0.981006
Target:  5'- cGCAGccgcGCCGGccucgagcaUGuACGCGCUUUUCUCa -3'
miRNA:   3'- cUGUC----UGGCU---------AC-UGCGCGGAAAGAGg -5'
30227 5' -53 NC_006273.1 + 190465 0.67 0.980799
Target:  5'- aGACAGaaguugcGCCGGacggcguugUGGCGCGCaggggCUCCg -3'
miRNA:   3'- -CUGUC-------UGGCU---------ACUGCGCGgaaa-GAGG- -5'
30227 5' -53 NC_006273.1 + 143566 0.67 0.980379
Target:  5'- --gAGGCCaaGAUGuccucgugucgcguACGCGCCUUUCgCCg -3'
miRNA:   3'- cugUCUGG--CUAC--------------UGCGCGGAAAGaGG- -5'
30227 5' -53 NC_006273.1 + 113134 0.68 0.978854
Target:  5'- aGGCGGcgGCCGcagagGGCGCGCCg--CUCa -3'
miRNA:   3'- -CUGUC--UGGCua---CUGCGCGGaaaGAGg -5'
30227 5' -53 NC_006273.1 + 46474 0.68 0.978854
Target:  5'- gGACAccGCCGGUGACGCccagGCCcUUC-CCg -3'
miRNA:   3'- -CUGUc-UGGCUACUGCG----CGGaAAGaGG- -5'
30227 5' -53 NC_006273.1 + 133055 0.68 0.978854
Target:  5'- uGACGGugUGGUGGCcaGCGCUUaUCaCCg -3'
miRNA:   3'- -CUGUCugGCUACUG--CGCGGAaAGaGG- -5'
30227 5' -53 NC_006273.1 + 32887 0.68 0.978403
Target:  5'- cGAUGGuGCCGAUGACGCGCaacugacCCu -3'
miRNA:   3'- -CUGUC-UGGCUACUGCGCGgaaaga-GG- -5'
30227 5' -53 NC_006273.1 + 119854 0.68 0.976526
Target:  5'- cGGCGGA-UGAUGGCGCGCgCUuccaUUCgcggCCg -3'
miRNA:   3'- -CUGUCUgGCUACUGCGCG-GA----AAGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.