miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 5' -53 NC_006273.1 + 1079 0.67 0.988011
Target:  5'- cGCGGGCCGccGG-GCGCCc--CUCCg -3'
miRNA:   3'- cUGUCUGGCuaCUgCGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 1495 0.67 0.988011
Target:  5'- gGACGGACUGuaccUGGCgcuggGCGCCgggUUCCg -3'
miRNA:   3'- -CUGUCUGGCu---ACUG-----CGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 12543 0.66 0.99066
Target:  5'- -cCAGGCgaGAUGACGCGuCCguugcugCUCUg -3'
miRNA:   3'- cuGUCUGg-CUACUGCGC-GGaaa----GAGG- -5'
30227 5' -53 NC_006273.1 + 26678 0.66 0.99066
Target:  5'- aGCucuGugUGGcgUGACGCGCUUUUCaccUCCa -3'
miRNA:   3'- cUGu--CugGCU--ACUGCGCGGAAAG---AGG- -5'
30227 5' -53 NC_006273.1 + 26904 0.67 0.984814
Target:  5'- uGCGGAggucggUCGAUGACGaUGUCgaUCUCCa -3'
miRNA:   3'- cUGUCU------GGCUACUGC-GCGGaaAGAGG- -5'
30227 5' -53 NC_006273.1 + 30138 0.66 0.9894
Target:  5'- -cCAGAUCGcucauGUGACGCGCCgagUCa-- -3'
miRNA:   3'- cuGUCUGGC-----UACUGCGCGGaa-AGagg -5'
30227 5' -53 NC_006273.1 + 30664 0.7 0.937578
Target:  5'- cGCAGAUCGcagcgGGCGCGCCUcggggCUCg -3'
miRNA:   3'- cUGUCUGGCua---CUGCGCGGAaa---GAGg -5'
30227 5' -53 NC_006273.1 + 32887 0.68 0.978403
Target:  5'- cGAUGGuGCCGAUGACGCGCaacugacCCu -3'
miRNA:   3'- -CUGUC-UGGCUACUGCGCGgaaaga-GG- -5'
30227 5' -53 NC_006273.1 + 34256 0.72 0.864016
Target:  5'- aGGCAGcgGCCGAUGAguuCGCGCUccucgggCUCCa -3'
miRNA:   3'- -CUGUC--UGGCUACU---GCGCGGaaa----GAGG- -5'
30227 5' -53 NC_006273.1 + 41122 0.66 0.9918
Target:  5'- cGACGGAgCCGGUGuccgaggaguCGuCGUCUUcCUCCu -3'
miRNA:   3'- -CUGUCU-GGCUACu---------GC-GCGGAAaGAGG- -5'
30227 5' -53 NC_006273.1 + 46474 0.68 0.978854
Target:  5'- gGACAccGCCGGUGACGCccagGCCcUUC-CCg -3'
miRNA:   3'- -CUGUc-UGGCUACUGCG----CGGaAAGaGG- -5'
30227 5' -53 NC_006273.1 + 46921 0.67 0.986485
Target:  5'- --gAGGCCGA-GGCGCGCUa---UCCg -3'
miRNA:   3'- cugUCUGGCUaCUGCGCGGaaagAGG- -5'
30227 5' -53 NC_006273.1 + 53646 0.66 0.9894
Target:  5'- -cCAGACCGAacgUGGCGgGUCgcagCUUCa -3'
miRNA:   3'- cuGUCUGGCU---ACUGCgCGGaaa-GAGG- -5'
30227 5' -53 NC_006273.1 + 55339 0.67 0.981006
Target:  5'- uGCAcGCCGAaGACgGCGCCgcUCUCg -3'
miRNA:   3'- cUGUcUGGCUaCUG-CGCGGaaAGAGg -5'
30227 5' -53 NC_006273.1 + 57713 0.69 0.965321
Target:  5'- cGGCGGcuCCGAgaGGCGCGUCUUgcgaUCCa -3'
miRNA:   3'- -CUGUCu-GGCUa-CUGCGCGGAAag--AGG- -5'
30227 5' -53 NC_006273.1 + 64038 0.67 0.984814
Target:  5'- cGGCGGuuUUGGUGGCGCGgCCUc-CUCCu -3'
miRNA:   3'- -CUGUCu-GGCUACUGCGC-GGAaaGAGG- -5'
30227 5' -53 NC_006273.1 + 69758 0.67 0.981006
Target:  5'- cGCGGcACCG-UGcUGCGUCUgagUCUCCa -3'
miRNA:   3'- cUGUC-UGGCuACuGCGCGGAa--AGAGG- -5'
30227 5' -53 NC_006273.1 + 70842 0.7 0.932708
Target:  5'- uGGCGGGCCGAccGcCGCGCC---CUCCc -3'
miRNA:   3'- -CUGUCUGGCUa-CuGCGCGGaaaGAGG- -5'
30227 5' -53 NC_006273.1 + 72277 0.71 0.910902
Target:  5'- cGGCAGGUCGAUGACGCuGCCgaugaggCCg -3'
miRNA:   3'- -CUGUCUGGCUACUGCG-CGGaaaga--GG- -5'
30227 5' -53 NC_006273.1 + 73944 0.66 0.994571
Target:  5'- -cCGGACCGccaacgacGUcGACGCGgCUUUCUUg -3'
miRNA:   3'- cuGUCUGGC--------UA-CUGCGCgGAAAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.