miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30227 5' -53 NC_006273.1 + 46921 0.67 0.986485
Target:  5'- --gAGGCCGA-GGCGCGCUa---UCCg -3'
miRNA:   3'- cugUCUGGCUaCUGCGCGGaaagAGG- -5'
30227 5' -53 NC_006273.1 + 32887 0.68 0.978403
Target:  5'- cGAUGGuGCCGAUGACGCGCaacugacCCu -3'
miRNA:   3'- -CUGUC-UGGCUACUGCGCGgaaaga-GG- -5'
30227 5' -53 NC_006273.1 + 133055 0.68 0.978854
Target:  5'- uGACGGugUGGUGGCcaGCGCUUaUCaCCg -3'
miRNA:   3'- -CUGUCugGCUACUG--CGCGGAaAGaGG- -5'
30227 5' -53 NC_006273.1 + 143566 0.67 0.980379
Target:  5'- --gAGGCCaaGAUGuccucgugucgcguACGCGCCUUUCgCCg -3'
miRNA:   3'- cugUCUGG--CUAC--------------UGCGCGGAAAGaGG- -5'
30227 5' -53 NC_006273.1 + 55339 0.67 0.981006
Target:  5'- uGCAcGCCGAaGACgGCGCCgcUCUCg -3'
miRNA:   3'- cUGUcUGGCUaCUG-CGCGGaaAGAGg -5'
30227 5' -53 NC_006273.1 + 69758 0.67 0.981006
Target:  5'- cGCGGcACCG-UGcUGCGUCUgagUCUCCa -3'
miRNA:   3'- cUGUC-UGGCuACuGCGCGGAa--AGAGG- -5'
30227 5' -53 NC_006273.1 + 26904 0.67 0.984814
Target:  5'- uGCGGAggucggUCGAUGACGaUGUCgaUCUCCa -3'
miRNA:   3'- cUGUCU------GGCUACUGC-GCGGaaAGAGG- -5'
30227 5' -53 NC_006273.1 + 148780 0.67 0.984814
Target:  5'- --gAGGCCGgcGGCgGCGCCgugcgUCUCa -3'
miRNA:   3'- cugUCUGGCuaCUG-CGCGGaa---AGAGg -5'
30227 5' -53 NC_006273.1 + 163743 0.67 0.984814
Target:  5'- cGGCAGGCCGcAUcGuCGuCGUCUUcCUCCu -3'
miRNA:   3'- -CUGUCUGGC-UA-CuGC-GCGGAAaGAGG- -5'
30227 5' -53 NC_006273.1 + 119854 0.68 0.976526
Target:  5'- cGGCGGA-UGAUGGCGCGCgCUuccaUUCgcggCCg -3'
miRNA:   3'- -CUGUCUgGCUACUGCGCG-GA----AAGa---GG- -5'
30227 5' -53 NC_006273.1 + 169291 0.68 0.971035
Target:  5'- --aAGGCuCGGUGAucgcUGCGCCUaaaguaugcgggaUUCUCCa -3'
miRNA:   3'- cugUCUG-GCUACU----GCGCGGA-------------AAGAGG- -5'
30227 5' -53 NC_006273.1 + 57713 0.69 0.965321
Target:  5'- cGGCGGcuCCGAgaGGCGCGUCUUgcgaUCCa -3'
miRNA:   3'- -CUGUCu-GGCUa-CUGCGCGGAAag--AGG- -5'
30227 5' -53 NC_006273.1 + 115907 0.76 0.68404
Target:  5'- cGGCAGGCCGGUGugGCGCUg--Ca-- -3'
miRNA:   3'- -CUGUCUGGCUACugCGCGGaaaGagg -5'
30227 5' -53 NC_006273.1 + 134510 0.76 0.68404
Target:  5'- gGACAcGCCG-UGGCGuCGCCcUUCUCCg -3'
miRNA:   3'- -CUGUcUGGCuACUGC-GCGGaAAGAGG- -5'
30227 5' -53 NC_006273.1 + 34256 0.72 0.864016
Target:  5'- aGGCAGcgGCCGAUGAguuCGCGCUccucgggCUCCa -3'
miRNA:   3'- -CUGUC--UGGCUACU---GCGCGGaaa----GAGG- -5'
30227 5' -53 NC_006273.1 + 72277 0.71 0.910902
Target:  5'- cGGCAGGUCGAUGACGCuGCCgaugaggCCg -3'
miRNA:   3'- -CUGUCUGGCUACUGCG-CGGaaaga--GG- -5'
30227 5' -53 NC_006273.1 + 178355 0.71 0.910902
Target:  5'- cGCGGGCCGcgGACGCcuCCUc-CUCCu -3'
miRNA:   3'- cUGUCUGGCuaCUGCGc-GGAaaGAGG- -5'
30227 5' -53 NC_006273.1 + 121730 0.7 0.927605
Target:  5'- --gAGACCGugaGACGCGCCUg---CCa -3'
miRNA:   3'- cugUCUGGCua-CUGCGCGGAaagaGG- -5'
30227 5' -53 NC_006273.1 + 30664 0.7 0.937578
Target:  5'- cGCAGAUCGcagcgGGCGCGCCUcggggCUCg -3'
miRNA:   3'- cUGUCUGGCua---CUGCGCGGAaa---GAGg -5'
30227 5' -53 NC_006273.1 + 218218 0.7 0.946625
Target:  5'- gGAC-GACCGGcaUGGCGCGgCCgucgUUUCCu -3'
miRNA:   3'- -CUGuCUGGCU--ACUGCGC-GGaa--AGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.