miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30228 3' -62.1 NC_006273.1 + 152854 0.66 0.778494
Target:  5'- cGGCCugGG-CGCCGcGGGAaaggccguuGGCGUaGCCa -3'
miRNA:   3'- -UCGGugUCgGCGGC-CUCU---------CUGCG-CGG- -5'
30228 3' -62.1 NC_006273.1 + 16894 0.66 0.778494
Target:  5'- cGGCgCGCGGCCagGCUGGAacgcaacgGAGGCuGCGUa -3'
miRNA:   3'- -UCG-GUGUCGG--CGGCCU--------CUCUG-CGCGg -5'
30228 3' -62.1 NC_006273.1 + 173304 0.66 0.778494
Target:  5'- uGCCGCGG-CGCuCGGuc-GACGCGUUg -3'
miRNA:   3'- uCGGUGUCgGCG-GCCucuCUGCGCGG- -5'
30228 3' -62.1 NC_006273.1 + 171063 0.66 0.778494
Target:  5'- gAGUCGCGGCgGuuGGGGcgccgauucccAGG-GCGCCu -3'
miRNA:   3'- -UCGGUGUCGgCggCCUC-----------UCUgCGCGG- -5'
30228 3' -62.1 NC_006273.1 + 146470 0.66 0.778494
Target:  5'- gAG-CGCAGCgacuucuuCGCCGGAGGcuguGGCcaGCGCCu -3'
miRNA:   3'- -UCgGUGUCG--------GCGGCCUCU----CUG--CGCGG- -5'
30228 3' -62.1 NC_006273.1 + 1966 0.66 0.778494
Target:  5'- cGCgGCggGGCCGgcgaCGGGGAcGAcguCGCGCCa -3'
miRNA:   3'- uCGgUG--UCGGCg---GCCUCU-CU---GCGCGG- -5'
30228 3' -62.1 NC_006273.1 + 54994 0.66 0.778494
Target:  5'- -cCCAUGGCCuGCuCGuagguGGGGGGCGCGUCg -3'
miRNA:   3'- ucGGUGUCGG-CG-GC-----CUCUCUGCGCGG- -5'
30228 3' -62.1 NC_006273.1 + 105339 0.66 0.778494
Target:  5'- cGCCACcGCCGCCaGGAcagucgcaaaaGAGGCuCGgCa -3'
miRNA:   3'- uCGGUGuCGGCGG-CCU-----------CUCUGcGCgG- -5'
30228 3' -62.1 NC_006273.1 + 132729 0.66 0.778494
Target:  5'- uGGUgAgAG-CGCCGGGGAGACGaCGaCa -3'
miRNA:   3'- -UCGgUgUCgGCGGCCUCUCUGC-GCgG- -5'
30228 3' -62.1 NC_006273.1 + 21216 0.66 0.778494
Target:  5'- uGGCCgGCuGCCGCCGcu--GugGCuGCCg -3'
miRNA:   3'- -UCGG-UGuCGGCGGCcucuCugCG-CGG- -5'
30228 3' -62.1 NC_006273.1 + 140795 0.66 0.778494
Target:  5'- aAGCCGgcggaGGUCGCCGGgagcagcgAGGGAuccCGgGCCg -3'
miRNA:   3'- -UCGGUg----UCGGCGGCC--------UCUCU---GCgCGG- -5'
30228 3' -62.1 NC_006273.1 + 1 0.66 0.777627
Target:  5'- AGCCcugucccgcaccgGCGGCgGUCGGggugugucGGGGGCGCGgCg -3'
miRNA:   3'- UCGG-------------UGUCGgCGGCC--------UCUCUGCGCgG- -5'
30228 3' -62.1 NC_006273.1 + 143134 0.66 0.777627
Target:  5'- cGCUGugUGGCCGUCuuucaGGAGAcgggcacGGCGCGCCg -3'
miRNA:   3'- uCGGU--GUCGGCGG-----CCUCU-------CUGCGCGG- -5'
30228 3' -62.1 NC_006273.1 + 38807 0.66 0.77589
Target:  5'- cGGCgCGCAGCaacgucugucggagCGCCGGcuGAGGCagcaGCGUCg -3'
miRNA:   3'- -UCG-GUGUCG--------------GCGGCCu-CUCUG----CGCGG- -5'
30228 3' -62.1 NC_006273.1 + 233699 0.66 0.77589
Target:  5'- cGGCgCGCAGCaacgucugucggagCGCCGGcuGAGGCagcaGCGUCg -3'
miRNA:   3'- -UCG-GUGUCG--------------GCGGCCu-CUCUG----CGCGG- -5'
30228 3' -62.1 NC_006273.1 + 36870 0.66 0.769776
Target:  5'- cGGUCGCGGaCCGCggaguCGGGGAGAaGCuCCu -3'
miRNA:   3'- -UCGGUGUC-GGCG-----GCCUCUCUgCGcGG- -5'
30228 3' -62.1 NC_006273.1 + 31240 0.66 0.769776
Target:  5'- gGGCgaCACGGUaCGCCGGGuAGcCGCGCa -3'
miRNA:   3'- -UCG--GUGUCG-GCGGCCUcUCuGCGCGg -5'
30228 3' -62.1 NC_006273.1 + 87959 0.66 0.769776
Target:  5'- cGCCACccccgaCGCCGGAc-GcCGCGCCg -3'
miRNA:   3'- uCGGUGucg---GCGGCCUcuCuGCGCGG- -5'
30228 3' -62.1 NC_006273.1 + 212036 0.66 0.769776
Target:  5'- cAGCCgcugacACAGUCGCUGGGG-GAUccguaGgGCCa -3'
miRNA:   3'- -UCGG------UGUCGGCGGCCUCuCUG-----CgCGG- -5'
30228 3' -62.1 NC_006273.1 + 70677 0.66 0.769776
Target:  5'- cGGUgGCGGCgG-UGGAG-GGCGCGCg -3'
miRNA:   3'- -UCGgUGUCGgCgGCCUCuCUGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.