miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3023 5' -53.8 NC_001493.1 + 81244 0.66 0.945039
Target:  5'- aUCGAGGAGGUCGU---GGGUcugcucguguaacagGGCCGc -3'
miRNA:   3'- -AGUUCCUCCGGCGuuuCUCA---------------UCGGUc -5'
3023 5' -53.8 NC_001493.1 + 44173 0.66 0.936366
Target:  5'- -gGGGGAGccgaucaGCCGCAGucAGccgcugagcucaccGGUGGCCAGg -3'
miRNA:   3'- agUUCCUC-------CGGCGUU--UC--------------UCAUCGGUC- -5'
3023 5' -53.8 NC_001493.1 + 126450 0.66 0.933291
Target:  5'- cCGGGGAGGcCCGUGucGGGUAuCCGa -3'
miRNA:   3'- aGUUCCUCC-GGCGUuuCUCAUcGGUc -5'
3023 5' -53.8 NC_001493.1 + 10896 0.66 0.933291
Target:  5'- cCGGGGAGGcCCGUGucGGGUAuCCGa -3'
miRNA:   3'- aGUUCCUCC-GGCGUuuCUCAUcGGUc -5'
3023 5' -53.8 NC_001493.1 + 101953 0.66 0.927963
Target:  5'- -gAGGGGGGUCu----GGGUGGCCAGu -3'
miRNA:   3'- agUUCCUCCGGcguuuCUCAUCGGUC- -5'
3023 5' -53.8 NC_001493.1 + 113437 0.67 0.897497
Target:  5'- -gGAGGGGGuuGCcGGGuccGUGGCUGGg -3'
miRNA:   3'- agUUCCUCCggCGuUUCu--CAUCGGUC- -5'
3023 5' -53.8 NC_001493.1 + 115704 0.68 0.844648
Target:  5'- cCAAGGGGG-CGUggGG-GUGGCgAGg -3'
miRNA:   3'- aGUUCCUCCgGCGuuUCuCAUCGgUC- -5'
3023 5' -53.8 NC_001493.1 + 59525 0.69 0.836217
Target:  5'- aCGcGGuGGCCGgAGAGAccGUGGCCGa -3'
miRNA:   3'- aGUuCCuCCGGCgUUUCU--CAUCGGUc -5'
3023 5' -53.8 NC_001493.1 + 127721 0.69 0.809764
Target:  5'- -gAGGGAGGCgGgAAuAGAugGUGGCCGGg -3'
miRNA:   3'- agUUCCUCCGgCgUU-UCU--CAUCGGUC- -5'
3023 5' -53.8 NC_001493.1 + 1988 0.69 0.809764
Target:  5'- aCAuuGuGGCCGuCAAGGAGUGGCUg- -3'
miRNA:   3'- aGUucCuCCGGC-GUUUCUCAUCGGuc -5'
3023 5' -53.8 NC_001493.1 + 117542 0.69 0.809764
Target:  5'- aCAuuGuGGCCGuCAAGGAGUGGCUg- -3'
miRNA:   3'- aGUucCuCCGGC-GUUUCUCAUCGGuc -5'
3023 5' -53.8 NC_001493.1 + 4087 0.7 0.78176
Target:  5'- cUCGAGGAGGuucccaacCCG-AAAGAGUAGCUc- -3'
miRNA:   3'- -AGUUCCUCC--------GGCgUUUCUCAUCGGuc -5'
3023 5' -53.8 NC_001493.1 + 27906 0.7 0.78176
Target:  5'- aCAAGGGGGCgaGaCGGAGAGUggaGGCgAGg -3'
miRNA:   3'- aGUUCCUCCGg-C-GUUUCUCA---UCGgUC- -5'
3023 5' -53.8 NC_001493.1 + 119641 0.7 0.78176
Target:  5'- cUCGAGGAGGuucccaacCCG-AAAGAGUAGCUc- -3'
miRNA:   3'- -AGUUCCUCC--------GGCgUUUCUCAUCGGuc -5'
3023 5' -53.8 NC_001493.1 + 9148 0.72 0.638383
Target:  5'- cCGGGGAuGGCgGCGAGGGGggaGGCCGu -3'
miRNA:   3'- aGUUCCU-CCGgCGUUUCUCa--UCGGUc -5'
3023 5' -53.8 NC_001493.1 + 124703 0.72 0.638383
Target:  5'- cCGGGGAuGGCgGCGAGGGGggaGGCCGu -3'
miRNA:   3'- aGUUCCU-CCGgCGUUUCUCa--UCGGUc -5'
3023 5' -53.8 NC_001493.1 + 27865 0.73 0.617203
Target:  5'- gCGAGGAGGagaGCGAAGAG-AGCgAGg -3'
miRNA:   3'- aGUUCCUCCgg-CGUUUCUCaUCGgUC- -5'
3023 5' -53.8 NC_001493.1 + 19550 0.73 0.606626
Target:  5'- -aGAGGcGGCCGCcgugaagacgAGAGAGcUGGCCAGc -3'
miRNA:   3'- agUUCCuCCGGCG----------UUUCUC-AUCGGUC- -5'
3023 5' -53.8 NC_001493.1 + 95830 0.74 0.520334
Target:  5'- aCAGGGAGGCCGUGAAGAcaucgggguugcucGUgacgAGCCAc -3'
miRNA:   3'- aGUUCCUCCGGCGUUUCU--------------CA----UCGGUc -5'
3023 5' -53.8 NC_001493.1 + 29568 0.76 0.435532
Target:  5'- cCAAcGGAGGCCGCugcGAAGGGUGGuCCGc -3'
miRNA:   3'- aGUU-CCUCCGGCG---UUUCUCAUC-GGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.