miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30230 3' -52.5 NC_006273.1 + 90291 0.66 0.992673
Target:  5'- -cCGCAGgUGGUGaucagcgccgccgCCAGCGGCg -3'
miRNA:   3'- cuGCGUCgACUACguaaa--------GGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 115600 0.66 0.992468
Target:  5'- gGACGguGCgGGUGCcgggacagcgugCCGGCGAa -3'
miRNA:   3'- -CUGCguCGaCUACGuaaa--------GGUCGCUg -5'
30230 3' -52.5 NC_006273.1 + 184721 0.66 0.992364
Target:  5'- gGGC-CGGCUGA-GCGUcUCCAGUuGCg -3'
miRNA:   3'- -CUGcGUCGACUaCGUAaAGGUCGcUG- -5'
30230 3' -52.5 NC_006273.1 + 77861 0.66 0.992364
Target:  5'- --aGgAGCUG-UGUcagUCCAGCGGCa -3'
miRNA:   3'- cugCgUCGACuACGuaaAGGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 40662 0.66 0.992364
Target:  5'- gGACGgagaGGCUGAcgaaaGCAUggaCAGCGGCg -3'
miRNA:   3'- -CUGCg---UCGACUa----CGUAaagGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 94231 0.66 0.991256
Target:  5'- cGGCGCAGUccGcgGCAgggUUCCGGCc-- -3'
miRNA:   3'- -CUGCGUCGa-CuaCGUa--AAGGUCGcug -5'
30230 3' -52.5 NC_006273.1 + 116212 0.66 0.991256
Target:  5'- aACGCAGCgagcucaGcgGCug-UCCGcGCGACa -3'
miRNA:   3'- cUGCGUCGa------CuaCGuaaAGGU-CGCUG- -5'
30230 3' -52.5 NC_006273.1 + 163048 0.66 0.990025
Target:  5'- aGCGCgGGCgagacGGUGCAggagUCCgaGGCGGCg -3'
miRNA:   3'- cUGCG-UCGa----CUACGUaa--AGG--UCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 190220 0.66 0.990025
Target:  5'- --aGCGGCUacaggggcccgaGAUGCAUUUgCAGCuGCa -3'
miRNA:   3'- cugCGUCGA------------CUACGUAAAgGUCGcUG- -5'
30230 3' -52.5 NC_006273.1 + 104183 0.66 0.989894
Target:  5'- aACGCGGUUGGUguugaaaGCGUUgaCGGCGAUg -3'
miRNA:   3'- cUGCGUCGACUA-------CGUAAagGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 164781 0.66 0.989223
Target:  5'- cGCGUAGCcgucUGAUuugggcuuguagccaGCAgugcUCCAGCGGCg -3'
miRNA:   3'- cUGCGUCG----ACUA---------------CGUaa--AGGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 158227 0.66 0.988662
Target:  5'- aGGCGCgGGCgc--GCGUcggCCGGCGACg -3'
miRNA:   3'- -CUGCG-UCGacuaCGUAaa-GGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 87695 0.66 0.988662
Target:  5'- gGugGCGG-UGGUGCAg---CGGCGGCu -3'
miRNA:   3'- -CugCGUCgACUACGUaaagGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 142190 0.66 0.988662
Target:  5'- uACGuCAGCaGGUGUAUauUUCCGGUaGACg -3'
miRNA:   3'- cUGC-GUCGaCUACGUA--AAGGUCG-CUG- -5'
30230 3' -52.5 NC_006273.1 + 160450 0.66 0.988662
Target:  5'- --aGCAGCgGGUGcCGUUUCUGGaCGAUg -3'
miRNA:   3'- cugCGUCGaCUAC-GUAAAGGUC-GCUG- -5'
30230 3' -52.5 NC_006273.1 + 1758 0.66 0.988662
Target:  5'- cGACGCcgacuGCUGGUGCAUgu--GGgGACg -3'
miRNA:   3'- -CUGCGu----CGACUACGUAaaggUCgCUG- -5'
30230 3' -52.5 NC_006273.1 + 202052 0.66 0.987158
Target:  5'- cACGCGGCUGccGCAg-UUCAGCucGGCg -3'
miRNA:   3'- cUGCGUCGACuaCGUaaAGGUCG--CUG- -5'
30230 3' -52.5 NC_006273.1 + 103671 0.66 0.987158
Target:  5'- --aGCAGCUcGGUGgAaagCCGGCGGCc -3'
miRNA:   3'- cugCGUCGA-CUACgUaaaGGUCGCUG- -5'
30230 3' -52.5 NC_006273.1 + 21513 0.66 0.987158
Target:  5'- cGACGcCAGCUGuuaCAUcgCCGGCGGg -3'
miRNA:   3'- -CUGC-GUCGACuacGUAaaGGUCGCUg -5'
30230 3' -52.5 NC_006273.1 + 219005 0.66 0.987158
Target:  5'- aGGCGU--CUGAUGgGagaaUCCAGCGACg -3'
miRNA:   3'- -CUGCGucGACUACgUaa--AGGUCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.