Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30230 | 5' | -59.3 | NC_006273.1 | + | 101902 | 0.66 | 0.875176 |
Target: 5'- gGGCCGCCgccAGcguccGCGCCugcacGCCgCCGUg -3' miRNA: 3'- gCCGGUGGa--UCuu---UGCGGu----CGG-GGCA- -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 39266 | 0.66 | 0.875176 |
Target: 5'- gCGGCCcgugcuguugGCC-AGAAACGCCGcGCgCCa- -3' miRNA: 3'- -GCCGG----------UGGaUCUUUGCGGU-CGgGGca -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 16579 | 0.66 | 0.875176 |
Target: 5'- uGGCC-CUUcgAGGuAGCGCCAGCCgCCc- -3' miRNA: 3'- gCCGGuGGA--UCU-UUGCGGUCGG-GGca -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 234159 | 0.66 | 0.875176 |
Target: 5'- gCGGCCcgugcuguugGCC-AGAAACGCCGcGCgCCa- -3' miRNA: 3'- -GCCGG----------UGGaUCUUUGCGGU-CGgGGca -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 143925 | 0.66 | 0.875176 |
Target: 5'- uGaGCCACgaGGAAcuaaccGCGCUAGCgCCGg -3' miRNA: 3'- gC-CGGUGgaUCUU------UGCGGUCGgGGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 59798 | 0.66 | 0.873794 |
Target: 5'- aCGGCgCACCgacucauCGCaCAGCUCCGa -3' miRNA: 3'- -GCCG-GUGGaucuuu-GCG-GUCGGGGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 233412 | 0.66 | 0.868189 |
Target: 5'- gCGGCgACgUcGuccccguCGCCGGCCCCGc -3' miRNA: 3'- -GCCGgUGgAuCuuu----GCGGUCGGGGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 38519 | 0.66 | 0.868189 |
Target: 5'- gCGGCgACgUcGuccccguCGCCGGCCCCGc -3' miRNA: 3'- -GCCGgUGgAuCuuu----GCGGUCGGGGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 185434 | 0.66 | 0.86748 |
Target: 5'- cCGGCUgcacgugGCCUGGcccGAACGCugcuucaucCAGCUCCGUu -3' miRNA: 3'- -GCCGG-------UGGAUC---UUUGCG---------GUCGGGGCA- -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 147895 | 0.66 | 0.86101 |
Target: 5'- uCGcGCCAgCUAcGcuGCGCUGGCCUCGg -3' miRNA: 3'- -GC-CGGUgGAU-CuuUGCGGUCGGGGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 196917 | 0.66 | 0.856612 |
Target: 5'- aGGCCGCCggcggGGAcGCGCCgugcgcgauggcaggAGCCgUGg -3' miRNA: 3'- gCCGGUGGa----UCUuUGCGG---------------UCGGgGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 2024 | 0.66 | 0.856612 |
Target: 5'- aGGCCGCCggcggGGAcGCGCCgugcgcgauggcaggAGCCgUGg -3' miRNA: 3'- gCCGGUGGa----UCUuUGCGG---------------UCGGgGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 46464 | 0.66 | 0.853643 |
Target: 5'- cCGGUCGgCUGGAcaccgccgguGACGCCcaGGCCCUu- -3' miRNA: 3'- -GCCGGUgGAUCU----------UUGCGG--UCGGGGca -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 46544 | 0.66 | 0.853643 |
Target: 5'- gGGCUGCUcaacuuUGGcguGC-CCAGCCCCGUa -3' miRNA: 3'- gCCGGUGG------AUCuu-UGcGGUCGGGGCA- -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 55949 | 0.66 | 0.853643 |
Target: 5'- uGGCCAgCU-GAGACGC-AGCaCCGUg -3' miRNA: 3'- gCCGGUgGAuCUUUGCGgUCGgGGCA- -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 174172 | 0.66 | 0.846093 |
Target: 5'- -cGCCGCCUcGAGACGCUGGgCUgCGUc -3' miRNA: 3'- gcCGGUGGAuCUUUGCGGUC-GGgGCA- -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 172582 | 0.66 | 0.846093 |
Target: 5'- uGGCCGgCUGGAucAGCGCCauuugugcguaGGCCgCGc -3' miRNA: 3'- gCCGGUgGAUCU--UUGCGG-----------UCGGgGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 161622 | 0.66 | 0.845329 |
Target: 5'- uGGUCGCCgcUGGcgGCGCCgcugccgGGCCUCGg -3' miRNA: 3'- gCCGGUGG--AUCuuUGCGG-------UCGGGGCa -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 46387 | 0.66 | 0.838368 |
Target: 5'- gGGCCccaucaugGCCcAGGGAuCGCgAGCCCCa- -3' miRNA: 3'- gCCGG--------UGGaUCUUU-GCGgUCGGGGca -5' |
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30230 | 5' | -59.3 | NC_006273.1 | + | 159852 | 0.66 | 0.838368 |
Target: 5'- uCGGCCGCCgAGGuuucGAgGCCGGCCa-GUu -3' miRNA: 3'- -GCCGGUGGaUCU----UUgCGGUCGGggCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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