miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30230 5' -59.3 NC_006273.1 + 101902 0.66 0.875176
Target:  5'- gGGCCGCCgccAGcguccGCGCCugcacGCCgCCGUg -3'
miRNA:   3'- gCCGGUGGa--UCuu---UGCGGu----CGG-GGCA- -5'
30230 5' -59.3 NC_006273.1 + 39266 0.66 0.875176
Target:  5'- gCGGCCcgugcuguugGCC-AGAAACGCCGcGCgCCa- -3'
miRNA:   3'- -GCCGG----------UGGaUCUUUGCGGU-CGgGGca -5'
30230 5' -59.3 NC_006273.1 + 16579 0.66 0.875176
Target:  5'- uGGCC-CUUcgAGGuAGCGCCAGCCgCCc- -3'
miRNA:   3'- gCCGGuGGA--UCU-UUGCGGUCGG-GGca -5'
30230 5' -59.3 NC_006273.1 + 234159 0.66 0.875176
Target:  5'- gCGGCCcgugcuguugGCC-AGAAACGCCGcGCgCCa- -3'
miRNA:   3'- -GCCGG----------UGGaUCUUUGCGGU-CGgGGca -5'
30230 5' -59.3 NC_006273.1 + 143925 0.66 0.875176
Target:  5'- uGaGCCACgaGGAAcuaaccGCGCUAGCgCCGg -3'
miRNA:   3'- gC-CGGUGgaUCUU------UGCGGUCGgGGCa -5'
30230 5' -59.3 NC_006273.1 + 59798 0.66 0.873794
Target:  5'- aCGGCgCACCgacucauCGCaCAGCUCCGa -3'
miRNA:   3'- -GCCG-GUGGaucuuu-GCG-GUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 233412 0.66 0.868189
Target:  5'- gCGGCgACgUcGuccccguCGCCGGCCCCGc -3'
miRNA:   3'- -GCCGgUGgAuCuuu----GCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 38519 0.66 0.868189
Target:  5'- gCGGCgACgUcGuccccguCGCCGGCCCCGc -3'
miRNA:   3'- -GCCGgUGgAuCuuu----GCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 185434 0.66 0.86748
Target:  5'- cCGGCUgcacgugGCCUGGcccGAACGCugcuucaucCAGCUCCGUu -3'
miRNA:   3'- -GCCGG-------UGGAUC---UUUGCG---------GUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 147895 0.66 0.86101
Target:  5'- uCGcGCCAgCUAcGcuGCGCUGGCCUCGg -3'
miRNA:   3'- -GC-CGGUgGAU-CuuUGCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 196917 0.66 0.856612
Target:  5'- aGGCCGCCggcggGGAcGCGCCgugcgcgauggcaggAGCCgUGg -3'
miRNA:   3'- gCCGGUGGa----UCUuUGCGG---------------UCGGgGCa -5'
30230 5' -59.3 NC_006273.1 + 2024 0.66 0.856612
Target:  5'- aGGCCGCCggcggGGAcGCGCCgugcgcgauggcaggAGCCgUGg -3'
miRNA:   3'- gCCGGUGGa----UCUuUGCGG---------------UCGGgGCa -5'
30230 5' -59.3 NC_006273.1 + 46464 0.66 0.853643
Target:  5'- cCGGUCGgCUGGAcaccgccgguGACGCCcaGGCCCUu- -3'
miRNA:   3'- -GCCGGUgGAUCU----------UUGCGG--UCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 46544 0.66 0.853643
Target:  5'- gGGCUGCUcaacuuUGGcguGC-CCAGCCCCGUa -3'
miRNA:   3'- gCCGGUGG------AUCuu-UGcGGUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 55949 0.66 0.853643
Target:  5'- uGGCCAgCU-GAGACGC-AGCaCCGUg -3'
miRNA:   3'- gCCGGUgGAuCUUUGCGgUCGgGGCA- -5'
30230 5' -59.3 NC_006273.1 + 174172 0.66 0.846093
Target:  5'- -cGCCGCCUcGAGACGCUGGgCUgCGUc -3'
miRNA:   3'- gcCGGUGGAuCUUUGCGGUC-GGgGCA- -5'
30230 5' -59.3 NC_006273.1 + 172582 0.66 0.846093
Target:  5'- uGGCCGgCUGGAucAGCGCCauuugugcguaGGCCgCGc -3'
miRNA:   3'- gCCGGUgGAUCU--UUGCGG-----------UCGGgGCa -5'
30230 5' -59.3 NC_006273.1 + 161622 0.66 0.845329
Target:  5'- uGGUCGCCgcUGGcgGCGCCgcugccgGGCCUCGg -3'
miRNA:   3'- gCCGGUGG--AUCuuUGCGG-------UCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 46387 0.66 0.838368
Target:  5'- gGGCCccaucaugGCCcAGGGAuCGCgAGCCCCa- -3'
miRNA:   3'- gCCGG--------UGGaUCUUU-GCGgUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 159852 0.66 0.838368
Target:  5'- uCGGCCGCCgAGGuuucGAgGCCGGCCa-GUu -3'
miRNA:   3'- -GCCGGUGGaUCU----UUgCGGUCGGggCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.