miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30230 5' -59.3 NC_006273.1 + 214456 1.08 0.002671
Target:  5'- aCGGCCACCUAGAAACGCCAGCCCCGUa -3'
miRNA:   3'- -GCCGGUGGAUCUUUGCGGUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 94107 0.84 0.101221
Target:  5'- gCGGCCgcACCUAgGGAGCGCgAGCCCCGUg -3'
miRNA:   3'- -GCCGG--UGGAU-CUUUGCGgUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 95476 0.79 0.220693
Target:  5'- aCGGCCuCCUcGAAGCGCCaAGCCUCGg -3'
miRNA:   3'- -GCCGGuGGAuCUUUGCGG-UCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 213843 0.77 0.277529
Target:  5'- cCGcGCCGCCguccucGAAACGCCAGCgCCCGc -3'
miRNA:   3'- -GC-CGGUGGau----CUUUGCGGUCG-GGGCa -5'
30230 5' -59.3 NC_006273.1 + 103535 0.76 0.345449
Target:  5'- gCGGCCGCCgUAGccg-GCCAGCCCCa- -3'
miRNA:   3'- -GCCGGUGG-AUCuuugCGGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 94633 0.75 0.366487
Target:  5'- cCGGCCugCUGacgcgcucgucucGAccgcacaAGCGCCGGCCCCGc -3'
miRNA:   3'- -GCCGGugGAU-------------CU-------UUGCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 16817 0.75 0.368023
Target:  5'- uGGCCgacaGCCUAGAGgaacucuuucGCGCCGGCCUCa- -3'
miRNA:   3'- gCCGG----UGGAUCUU----------UGCGGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 116010 0.74 0.432983
Target:  5'- aCGGCCGCCUcaaa--GuCCAGCCCCGg -3'
miRNA:   3'- -GCCGGUGGAucuuugC-GGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 75504 0.73 0.466978
Target:  5'- uCGGCCGCCUgcgaccuagaugcAGAAcugGCCGGCCUCGa -3'
miRNA:   3'- -GCCGGUGGA-------------UCUUug-CGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 193156 0.73 0.476814
Target:  5'- gCGGCCugCUgugcucugcGGAAaaGCGCCGGUCUCGg -3'
miRNA:   3'- -GCCGGugGA---------UCUU--UGCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 46328 0.73 0.494955
Target:  5'- gCGGCCGCCUAcgc-CGCCGGUCCgGg -3'
miRNA:   3'- -GCCGGUGGAUcuuuGCGGUCGGGgCa -5'
30230 5' -59.3 NC_006273.1 + 131038 0.73 0.494955
Target:  5'- uCGcGCUACCUGGccgcGCGCCAGCCCa-- -3'
miRNA:   3'- -GC-CGGUGGAUCuu--UGCGGUCGGGgca -5'
30230 5' -59.3 NC_006273.1 + 110088 0.73 0.504143
Target:  5'- gCGaGUCACCUAGAcgcaAACGCgGGCCCgGa -3'
miRNA:   3'- -GC-CGGUGGAUCU----UUGCGgUCGGGgCa -5'
30230 5' -59.3 NC_006273.1 + 200683 0.72 0.512474
Target:  5'- gCGGCCGCCggcggucAGAaaaggaaAACGCCGGCgCCCa- -3'
miRNA:   3'- -GCCGGUGGa------UCU-------UUGCGGUCG-GGGca -5'
30230 5' -59.3 NC_006273.1 + 79651 0.72 0.56065
Target:  5'- aCGGCCACCUucucGAGCGacaGGCCCUGa -3'
miRNA:   3'- -GCCGGUGGAuc--UUUGCgg-UCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 117925 0.72 0.56065
Target:  5'- aGGCCACgCUAGAGACGacaCAGCCggCGa -3'
miRNA:   3'- gCCGGUG-GAUCUUUGCg--GUCGGg-GCa -5'
30230 5' -59.3 NC_006273.1 + 187172 0.71 0.570255
Target:  5'- gGGUC-CCUGGAAGCguguguggGCCGGCCCuCGg -3'
miRNA:   3'- gCCGGuGGAUCUUUG--------CGGUCGGG-GCa -5'
30230 5' -59.3 NC_006273.1 + 13599 0.71 0.570255
Target:  5'- gGGCCGCCgugcuGGAGgGCC-GCCCCa- -3'
miRNA:   3'- gCCGGUGGau---CUUUgCGGuCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 68179 0.71 0.5799
Target:  5'- cCGGCCGCUgacgcuGuuuACGCCGGCCuCCGc -3'
miRNA:   3'- -GCCGGUGGau----Cuu-UGCGGUCGG-GGCa -5'
30230 5' -59.3 NC_006273.1 + 178972 0.71 0.589578
Target:  5'- gGGCCgcguGCCUGGGAACGUgcgcacggcgCGGUCCCGc -3'
miRNA:   3'- gCCGG----UGGAUCUUUGCG----------GUCGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.