miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30230 5' -59.3 NC_006273.1 + 50087 0.66 0.838368
Target:  5'- uGGUCACCacc--ACGCCGGCCCgaCGUu -3'
miRNA:   3'- gCCGGUGGaucuuUGCGGUCGGG--GCA- -5'
30230 5' -59.3 NC_006273.1 + 46387 0.66 0.838368
Target:  5'- gGGCCccaucaugGCCcAGGGAuCGCgAGCCCCa- -3'
miRNA:   3'- gCCGG--------UGGaUCUUU-GCGgUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 227113 0.66 0.838368
Target:  5'- aCGGCgGCgUGGGuauGCGCCGcuGCCCUa- -3'
miRNA:   3'- -GCCGgUGgAUCUu--UGCGGU--CGGGGca -5'
30230 5' -59.3 NC_006273.1 + 159852 0.66 0.838368
Target:  5'- uCGGCCGCCgAGGuuucGAgGCCGGCCa-GUu -3'
miRNA:   3'- -GCCGGUGGaUCU----UUgCGGUCGGggCA- -5'
30230 5' -59.3 NC_006273.1 + 213728 0.67 0.830472
Target:  5'- uCGGCCACC----AGCGCCguGGUCUCGg -3'
miRNA:   3'- -GCCGGUGGaucuUUGCGG--UCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 189517 0.67 0.830472
Target:  5'- uGGCCaggACCaGGGAA-GCCAGUCCgGUa -3'
miRNA:   3'- gCCGG---UGGaUCUUUgCGGUCGGGgCA- -5'
30230 5' -59.3 NC_006273.1 + 95074 0.67 0.830472
Target:  5'- uCGGuCCGCCUuauccuGGGcgUugGCCGGUCCCGUg -3'
miRNA:   3'- -GCC-GGUGGA------UCUuuG--CGGUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 213379 0.67 0.814194
Target:  5'- gGGCCACCgaucccGCgGCCAGCagCCCGa -3'
miRNA:   3'- gCCGGUGGaucuu-UG-CGGUCG--GGGCa -5'
30230 5' -59.3 NC_006273.1 + 110244 0.67 0.814194
Target:  5'- gGGCC-CgUGGGAcggagacuuggGCGCCGGCCUCu- -3'
miRNA:   3'- gCCGGuGgAUCUU-----------UGCGGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 173623 0.67 0.814194
Target:  5'- uCGGCCAauUCUGGGAACaGCgGGUcuCCCGg -3'
miRNA:   3'- -GCCGGU--GGAUCUUUG-CGgUCG--GGGCa -5'
30230 5' -59.3 NC_006273.1 + 62444 0.67 0.814194
Target:  5'- aCGGCgACC-AGAAGC-CCGGUgCCGa -3'
miRNA:   3'- -GCCGgUGGaUCUUUGcGGUCGgGGCa -5'
30230 5' -59.3 NC_006273.1 + 140861 0.67 0.811699
Target:  5'- gCGGCCGCUUcucgGGgcGCgaggugcccgccugGCCGGCCUCGUc -3'
miRNA:   3'- -GCCGGUGGA----UCuuUG--------------CGGUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 71694 0.67 0.811699
Target:  5'- uGGCCGCCgacguggcAGGcggucuguuuaaccAGCGCgCAGCCUCGa -3'
miRNA:   3'- gCCGGUGGa-------UCU--------------UUGCG-GUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 138042 0.67 0.805826
Target:  5'- cCGG-CGCCUGGuuGCuGCCGcGUCCCGa -3'
miRNA:   3'- -GCCgGUGGAUCuuUG-CGGU-CGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 95204 0.67 0.805826
Target:  5'- uCGGCCGCCcagccgGGGucGGCGCCucGGaCCCCa- -3'
miRNA:   3'- -GCCGGUGGa-----UCU--UUGCGG--UC-GGGGca -5'
30230 5' -59.3 NC_006273.1 + 82493 0.67 0.805826
Target:  5'- aGGCCACC-----GCGCCacccacGGCCCCa- -3'
miRNA:   3'- gCCGGUGGaucuuUGCGG------UCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 32835 0.67 0.805826
Target:  5'- uCGGCCGCC-----ACGCCGGCCaCGc -3'
miRNA:   3'- -GCCGGUGGaucuuUGCGGUCGGgGCa -5'
30230 5' -59.3 NC_006273.1 + 218813 0.67 0.797316
Target:  5'- gGcGCUACCUcGAAGgGCCAGCaguCCGUc -3'
miRNA:   3'- gC-CGGUGGAuCUUUgCGGUCGg--GGCA- -5'
30230 5' -59.3 NC_006273.1 + 152556 0.67 0.797316
Target:  5'- uCGGCCACCUgcagcAGuAGCGCCAGguuagCCUGc -3'
miRNA:   3'- -GCCGGUGGA-----UCuUUGCGGUCg----GGGCa -5'
30230 5' -59.3 NC_006273.1 + 201143 0.67 0.797316
Target:  5'- uCGGCCGCUgccugcCGgCGGCCCUGUg -3'
miRNA:   3'- -GCCGGUGGaucuuuGCgGUCGGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.