miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30230 5' -59.3 NC_006273.1 + 253 0.68 0.771001
Target:  5'- gCGGgCGCaagggAGGAGuCGCgGGCCCCGg -3'
miRNA:   3'- -GCCgGUGga---UCUUU-GCGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 2024 0.66 0.856612
Target:  5'- aGGCCGCCggcggGGAcGCGCCgugcgcgauggcaggAGCCgUGg -3'
miRNA:   3'- gCCGGUGGa----UCUuUGCGG---------------UCGGgGCa -5'
30230 5' -59.3 NC_006273.1 + 2466 0.67 0.78867
Target:  5'- gCGGCCGCgCUGGGAcGCGCUgcaccuGCaCCCGc -3'
miRNA:   3'- -GCCGGUG-GAUCUU-UGCGGu-----CG-GGGCa -5'
30230 5' -59.3 NC_006273.1 + 7973 0.69 0.715547
Target:  5'- aGGCCGCCU--GAGCGgUAGCUCCu- -3'
miRNA:   3'- gCCGGUGGAucUUUGCgGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 13599 0.71 0.570255
Target:  5'- gGGCCGCCgugcuGGAGgGCC-GCCCCa- -3'
miRNA:   3'- gCCGGUGGau---CUUUgCGGuCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 16579 0.66 0.875176
Target:  5'- uGGCC-CUUcgAGGuAGCGCCAGCCgCCc- -3'
miRNA:   3'- gCCGGuGGA--UCU-UUGCGGUCGG-GGca -5'
30230 5' -59.3 NC_006273.1 + 16817 0.75 0.368023
Target:  5'- uGGCCgacaGCCUAGAGgaacucuuucGCGCCGGCCUCa- -3'
miRNA:   3'- gCCGG----UGGAUCUU----------UGCGGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 23318 0.68 0.770105
Target:  5'- aGGCCACCgGGAcggccugGGCGCCcccacCCCCGc -3'
miRNA:   3'- gCCGGUGGaUCU-------UUGCGGuc---GGGGCa -5'
30230 5' -59.3 NC_006273.1 + 30970 0.7 0.647045
Target:  5'- uGGCCGCCUGGcuugugcGugGCaacuucuccgauaCGGCCCCGa -3'
miRNA:   3'- gCCGGUGGAUCu------UugCG-------------GUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 32835 0.67 0.805826
Target:  5'- uCGGCCGCC-----ACGCCGGCCaCGc -3'
miRNA:   3'- -GCCGGUGGaucuuUGCGGUCGGgGCa -5'
30230 5' -59.3 NC_006273.1 + 34137 0.68 0.779895
Target:  5'- aGGCCGCgUAGAgguccuucAACGCC-GCUUCGg -3'
miRNA:   3'- gCCGGUGgAUCU--------UUGCGGuCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 34546 0.66 0.838368
Target:  5'- gGGCaCGCCUcGAAGCGC-GGCCCa-- -3'
miRNA:   3'- gCCG-GUGGAuCUUUGCGgUCGGGgca -5'
30230 5' -59.3 NC_006273.1 + 35805 0.68 0.771001
Target:  5'- gCGGCCAgCCUggcgcaggcacgAGAAGCGCCgguaGGUCuuGUg -3'
miRNA:   3'- -GCCGGU-GGA------------UCUUUGCGG----UCGGggCA- -5'
30230 5' -59.3 NC_006273.1 + 36014 0.68 0.761993
Target:  5'- -uGCCgAUCUucGAGACGCUAGCCCUGc -3'
miRNA:   3'- gcCGG-UGGAu-CUUUGCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 38519 0.66 0.868189
Target:  5'- gCGGCgACgUcGuccccguCGCCGGCCCCGc -3'
miRNA:   3'- -GCCGgUGgAuCuuu----GCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 39266 0.66 0.875176
Target:  5'- gCGGCCcgugcuguugGCC-AGAAACGCCGcGCgCCa- -3'
miRNA:   3'- -GCCGG----------UGGaUCUUUGCGGU-CGgGGca -5'
30230 5' -59.3 NC_006273.1 + 40191 0.68 0.771001
Target:  5'- gCGGgCGCaagggAGGAGuCGCgGGCCCCGg -3'
miRNA:   3'- -GCCgGUGga---UCUUU-GCGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 42209 0.7 0.667482
Target:  5'- aCGGCCGCCgaacgGGcAGCGUgGGCUUCGg -3'
miRNA:   3'- -GCCGGUGGa----UCuUUGCGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 43304 0.69 0.724998
Target:  5'- uGGCUuuucuccagaACCcGGAAGCGUCGucGCCCCGg -3'
miRNA:   3'- gCCGG----------UGGaUCUUUGCGGU--CGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 46328 0.73 0.494955
Target:  5'- gCGGCCGCCUAcgc-CGCCGGUCCgGg -3'
miRNA:   3'- -GCCGGUGGAUcuuuGCGGUCGGGgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.