miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30230 5' -59.3 NC_006273.1 + 235084 0.68 0.771001
Target:  5'- gCGGgCGCaagggAGGAGuCGCgGGCCCCGg -3'
miRNA:   3'- -GCCgGUGga---UCUUU-GCGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 64819 0.69 0.724998
Target:  5'- cCGcGCCGCCUGGAGuCGCgguuCGGCCggaCCGUg -3'
miRNA:   3'- -GC-CGGUGGAUCUUuGCG----GUCGG---GGCA- -5'
30230 5' -59.3 NC_006273.1 + 58030 0.69 0.728758
Target:  5'- aCGGCCGCCauuuccacgucguuuUGGAu-CGCCGGUgCCGc -3'
miRNA:   3'- -GCCGGUGG---------------AUCUuuGCGGUCGgGGCa -5'
30230 5' -59.3 NC_006273.1 + 135547 0.68 0.734376
Target:  5'- aGGCCGCaCUGGAcGACGUcaacaucauCAGCgCCGUg -3'
miRNA:   3'- gCCGGUG-GAUCU-UUGCG---------GUCGgGGCA- -5'
30230 5' -59.3 NC_006273.1 + 86740 0.68 0.743673
Target:  5'- aGGCCgGCCUcc-GGCGCCAGgaUCCCGUa -3'
miRNA:   3'- gCCGG-UGGAucuUUGCGGUC--GGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 80232 0.68 0.743673
Target:  5'- aCGGCCuACCUGG--GCG-CGGCCCuCGg -3'
miRNA:   3'- -GCCGG-UGGAUCuuUGCgGUCGGG-GCa -5'
30230 5' -59.3 NC_006273.1 + 226704 0.68 0.743673
Target:  5'- uGGCUGCgUacccgcuacGGGAACGCCAGCgCCUGc -3'
miRNA:   3'- gCCGGUGgA---------UCUUUGCGGUCG-GGGCa -5'
30230 5' -59.3 NC_006273.1 + 162483 0.68 0.761993
Target:  5'- gCGGCCGCCUcccuccuccgAGAacGACgGUgAGUCCCGg -3'
miRNA:   3'- -GCCGGUGGA----------UCU--UUG-CGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 253 0.68 0.771001
Target:  5'- gCGGgCGCaagggAGGAGuCGCgGGCCCCGg -3'
miRNA:   3'- -GCCgGUGga---UCUUU-GCGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 62173 0.69 0.724998
Target:  5'- aCGGCUGCCacGGAGGCG-CGGCCCUa- -3'
miRNA:   3'- -GCCGGUGGa-UCUUUGCgGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 83191 0.69 0.724998
Target:  5'- aGGCUuCUgcGAuuuGCGCCAGCgCCCGg -3'
miRNA:   3'- gCCGGuGGauCUu--UGCGGUCG-GGGCa -5'
30230 5' -59.3 NC_006273.1 + 43304 0.69 0.724998
Target:  5'- uGGCUuuucuccagaACCcGGAAGCGUCGucGCCCCGg -3'
miRNA:   3'- gCCGG----------UGGaUCUUUGCGGU--CGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 94107 0.84 0.101221
Target:  5'- gCGGCCgcACCUAgGGAGCGCgAGCCCCGUg -3'
miRNA:   3'- -GCCGG--UGGAU-CUUUGCGgUCGGGGCA- -5'
30230 5' -59.3 NC_006273.1 + 103535 0.76 0.345449
Target:  5'- gCGGCCGCCgUAGccg-GCCAGCCCCa- -3'
miRNA:   3'- -GCCGGUGG-AUCuuugCGGUCGGGGca -5'
30230 5' -59.3 NC_006273.1 + 116010 0.74 0.432983
Target:  5'- aCGGCCGCCUcaaa--GuCCAGCCCCGg -3'
miRNA:   3'- -GCCGGUGGAucuuugC-GGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 75504 0.73 0.466978
Target:  5'- uCGGCCGCCUgcgaccuagaugcAGAAcugGCCGGCCUCGa -3'
miRNA:   3'- -GCCGGUGGA-------------UCUUug-CGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 193156 0.73 0.476814
Target:  5'- gCGGCCugCUgugcucugcGGAAaaGCGCCGGUCUCGg -3'
miRNA:   3'- -GCCGGugGA---------UCUU--UGCGGUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 121265 0.7 0.64802
Target:  5'- aGGUUACCU-GAGAUGCuCAGgCCCGg -3'
miRNA:   3'- gCCGGUGGAuCUUUGCG-GUCgGGGCa -5'
30230 5' -59.3 NC_006273.1 + 42209 0.7 0.667482
Target:  5'- aCGGCCGCCgaacgGGcAGCGUgGGCUUCGg -3'
miRNA:   3'- -GCCGGUGGa----UCuUUGCGgUCGGGGCa -5'
30230 5' -59.3 NC_006273.1 + 130214 0.69 0.715547
Target:  5'- cCGGCUACCUGGGcGAgGCCgcGGCgCCGc -3'
miRNA:   3'- -GCCGGUGGAUCU-UUgCGG--UCGgGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.