miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30231 3' -60.6 NC_006273.1 + 93326 0.66 0.791076
Target:  5'- -cGCCGCUgGCGGCGCugCcGCg---- -3'
miRNA:   3'- uuCGGCGA-CGCCGCGugGaUGggaag -5'
30231 3' -60.6 NC_006273.1 + 31454 0.66 0.791076
Target:  5'- gAAGCCGCcaugagGCGGUggcuGCGCCU-CCUcgUCg -3'
miRNA:   3'- -UUCGGCGa-----CGCCG----CGUGGAuGGGa-AG- -5'
30231 3' -60.6 NC_006273.1 + 145680 0.66 0.791076
Target:  5'- cGGUCGCaUGCugGGCGCuagcguggACCUACCUaUCg -3'
miRNA:   3'- uUCGGCG-ACG--CCGCG--------UGGAUGGGaAG- -5'
30231 3' -60.6 NC_006273.1 + 171062 0.66 0.791076
Target:  5'- gGAGUCGCgGCGGUugggGCGCCgauuCCCa-- -3'
miRNA:   3'- -UUCGGCGaCGCCG----CGUGGau--GGGaag -5'
30231 3' -60.6 NC_006273.1 + 72571 0.66 0.791076
Target:  5'- gAGGCCccgcaGCUGCGGCgaccGCGgCUGCCgUUg -3'
miRNA:   3'- -UUCGG-----CGACGCCG----CGUgGAUGGgAAg -5'
30231 3' -60.6 NC_006273.1 + 75265 0.66 0.791076
Target:  5'- uGGCCGCcGCGGCGgcCGCCUcauACCa--- -3'
miRNA:   3'- uUCGGCGaCGCCGC--GUGGA---UGGgaag -5'
30231 3' -60.6 NC_006273.1 + 68265 0.66 0.782243
Target:  5'- cGGCCGaCUGuCGGUacGCGCC-ACUCUUUg -3'
miRNA:   3'- uUCGGC-GAC-GCCG--CGUGGaUGGGAAG- -5'
30231 3' -60.6 NC_006273.1 + 84025 0.66 0.782243
Target:  5'- cAGCCGCgagaaGGCGCGCCgGCgCCa-- -3'
miRNA:   3'- uUCGGCGacg--CCGCGUGGaUG-GGaag -5'
30231 3' -60.6 NC_006273.1 + 140999 0.66 0.782243
Target:  5'- cGGGCCGCgccCGGUGC-CCgGCCCa-- -3'
miRNA:   3'- -UUCGGCGac-GCCGCGuGGaUGGGaag -5'
30231 3' -60.6 NC_006273.1 + 234102 0.66 0.782243
Target:  5'- cGGCCGUccgaGCGGCaGCAgCgUGCCCgcgUCg -3'
miRNA:   3'- uUCGGCGa---CGCCG-CGU-GgAUGGGa--AG- -5'
30231 3' -60.6 NC_006273.1 + 141219 0.66 0.782243
Target:  5'- cAGUUuCUGCGGCGUACCUACggaCCg-- -3'
miRNA:   3'- uUCGGcGACGCCGCGUGGAUG---GGaag -5'
30231 3' -60.6 NC_006273.1 + 39209 0.66 0.782243
Target:  5'- cGGCCGUccgaGCGGCaGCAgCgUGCCCgcgUCg -3'
miRNA:   3'- uUCGGCGa---CGCCG-CGU-GgAUGGGa--AG- -5'
30231 3' -60.6 NC_006273.1 + 144608 0.66 0.773286
Target:  5'- gGGGCUGCUG-GGCGCuuccauggACCUGUgCUUCg -3'
miRNA:   3'- -UUCGGCGACgCCGCG--------UGGAUGgGAAG- -5'
30231 3' -60.6 NC_006273.1 + 192669 0.66 0.773286
Target:  5'- -cGCCG-UGUGGCGCGgCCUGgCCg-- -3'
miRNA:   3'- uuCGGCgACGCCGCGU-GGAUgGGaag -5'
30231 3' -60.6 NC_006273.1 + 155322 0.66 0.773286
Target:  5'- -cGCUGCUGgaCGaGUGCGCCUGCCg--- -3'
miRNA:   3'- uuCGGCGAC--GC-CGCGUGGAUGGgaag -5'
30231 3' -60.6 NC_006273.1 + 203987 0.66 0.773286
Target:  5'- uGAGCCGCgGCgauucgGGCGUGCCgcgaugccgcaGCUCUUCg -3'
miRNA:   3'- -UUCGGCGaCG------CCGCGUGGa----------UGGGAAG- -5'
30231 3' -60.6 NC_006273.1 + 145087 0.66 0.764212
Target:  5'- -cGCCGCUgGCGGCGgcgcugaucacCACCUgcggggcaGCCCg-- -3'
miRNA:   3'- uuCGGCGA-CGCCGC-----------GUGGA--------UGGGaag -5'
30231 3' -60.6 NC_006273.1 + 148663 0.66 0.764212
Target:  5'- uGAGgUGCUcucGUGGUGCgGCCUGCCCg-- -3'
miRNA:   3'- -UUCgGCGA---CGCCGCG-UGGAUGGGaag -5'
30231 3' -60.6 NC_006273.1 + 141884 0.66 0.764212
Target:  5'- gAGGCCgGCgGCGGCGuCACCacuuugaccACCCUg- -3'
miRNA:   3'- -UUCGG-CGaCGCCGC-GUGGa--------UGGGAag -5'
30231 3' -60.6 NC_006273.1 + 162590 0.66 0.764212
Target:  5'- -cGCCGuCUGCGGCucUACCcGCCCg-- -3'
miRNA:   3'- uuCGGC-GACGCCGc-GUGGaUGGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.