Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30231 | 5' | -58.2 | NC_006273.1 | + | 1577 | 0.66 | 0.90679 |
Target: 5'- cGCGAcGCGGaCGAGUGGuuucGGCACGGc-- -3' miRNA: 3'- -UGUU-CGCUcGCUCACC----CCGUGCCacu -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 196470 | 0.66 | 0.90679 |
Target: 5'- cGCGAcGCGGaCGAGUGGuuucGGCACGGc-- -3' miRNA: 3'- -UGUU-CGCUcGCUCACC----CCGUGCCacu -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 192882 | 0.66 | 0.906197 |
Target: 5'- gACGuuGUGGGCGGucgguguauuuuuGUGGGuuGCGGUGAg -3' miRNA: 3'- -UGUu-CGCUCGCU-------------CACCCcgUGCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 105994 | 0.66 | 0.906197 |
Target: 5'- -aAAGCG-GUGGGUGGuaaaaaccgcuuuGGCuACGGUGGu -3' miRNA: 3'- ugUUCGCuCGCUCACC-------------CCG-UGCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 41984 | 0.66 | 0.900767 |
Target: 5'- -----aGGGUGGGUGGGGC--GGUGAa -3' miRNA: 3'- uguucgCUCGCUCACCCCGugCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 119513 | 0.66 | 0.888078 |
Target: 5'- gGCAAGCGucGUaGGUGcGGGUACGGa-- -3' miRNA: 3'- -UGUUCGCu-CGcUCAC-CCCGUGCCacu -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 212048 | 0.67 | 0.874556 |
Target: 5'- cGCGAGgGucGCGGGggugGGGGCGCccaggccgucccGGUGGc -3' miRNA: 3'- -UGUUCgCu-CGCUCa---CCCCGUG------------CCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 157301 | 0.67 | 0.874556 |
Target: 5'- aGCGgcGGCGguGGUGAcUGGGG-ACGGUGAu -3' miRNA: 3'- -UGU--UCGC--UCGCUcACCCCgUGCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 232229 | 0.67 | 0.837335 |
Target: 5'- gGC-AGCGGGguCGGGguaGGGUACGGUGGg -3' miRNA: 3'- -UGuUCGCUC--GCUCac-CCCGUGCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 130571 | 0.68 | 0.82935 |
Target: 5'- -gAAGUGGGgGAG-GGGGaaACGGUGGa -3' miRNA: 3'- ugUUCGCUCgCUCaCCCCg-UGCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 234470 | 0.68 | 0.812889 |
Target: 5'- cGCGGccGCGAcCGAGgggcggGGGGCGCGGcGAc -3' miRNA: 3'- -UGUU--CGCUcGCUCa-----CCCCGUGCCaCU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 39577 | 0.68 | 0.812889 |
Target: 5'- cGCGGccGCGAcCGAGgggcggGGGGCGCGGcGAc -3' miRNA: 3'- -UGUU--CGCUcGCUCa-----CCCCGUGCCaCU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 156259 | 0.69 | 0.741593 |
Target: 5'- aACGAaCG-GCGGGUGGaGGCGCGGg-- -3' miRNA: 3'- -UGUUcGCuCGCUCACC-CCGUGCCacu -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 178720 | 0.7 | 0.722724 |
Target: 5'- aAUGAGC-AGCG-GUGGcGGCGgCGGUGAu -3' miRNA: 3'- -UGUUCGcUCGCuCACC-CCGU-GCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 101993 | 0.7 | 0.713177 |
Target: 5'- aGCAGGCGccguggGGCuGAaagaggaggacGUGGGGCGCGGUa- -3' miRNA: 3'- -UGUUCGC------UCG-CU-----------CACCCCGUGCCAcu -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 72681 | 0.7 | 0.703566 |
Target: 5'- gGCAcGGCGAGCuGGUGGGGUgaagcACGGg-- -3' miRNA: 3'- -UGU-UCGCUCGcUCACCCCG-----UGCCacu -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 141701 | 0.7 | 0.684186 |
Target: 5'- -gGGGgGGGUGAGggggGGGGuUACGGUGGu -3' miRNA: 3'- ugUUCgCUCGCUCa---CCCC-GUGCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 140644 | 0.7 | 0.674433 |
Target: 5'- -gGGGCGGGcCGGGaagGGGaGCugGGUGGg -3' miRNA: 3'- ugUUCGCUC-GCUCa--CCC-CGugCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 140682 | 0.71 | 0.654837 |
Target: 5'- cGCAGGCGAcgacgGCGGGUGGuGGUGguggUGGUGGa -3' miRNA: 3'- -UGUUCGCU-----CGCUCACC-CCGU----GCCACU- -5' |
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30231 | 5' | -58.2 | NC_006273.1 | + | 162583 | 0.74 | 0.500138 |
Target: 5'- aGCAGGCGAGCG-GUGuuGGuGCGCuGGUGGu -3' miRNA: 3'- -UGUUCGCUCGCuCAC--CC-CGUG-CCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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