miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30231 5' -58.2 NC_006273.1 + 1577 0.66 0.90679
Target:  5'- cGCGAcGCGGaCGAGUGGuuucGGCACGGc-- -3'
miRNA:   3'- -UGUU-CGCUcGCUCACC----CCGUGCCacu -5'
30231 5' -58.2 NC_006273.1 + 196470 0.66 0.90679
Target:  5'- cGCGAcGCGGaCGAGUGGuuucGGCACGGc-- -3'
miRNA:   3'- -UGUU-CGCUcGCUCACC----CCGUGCCacu -5'
30231 5' -58.2 NC_006273.1 + 192882 0.66 0.906197
Target:  5'- gACGuuGUGGGCGGucgguguauuuuuGUGGGuuGCGGUGAg -3'
miRNA:   3'- -UGUu-CGCUCGCU-------------CACCCcgUGCCACU- -5'
30231 5' -58.2 NC_006273.1 + 105994 0.66 0.906197
Target:  5'- -aAAGCG-GUGGGUGGuaaaaaccgcuuuGGCuACGGUGGu -3'
miRNA:   3'- ugUUCGCuCGCUCACC-------------CCG-UGCCACU- -5'
30231 5' -58.2 NC_006273.1 + 41984 0.66 0.900767
Target:  5'- -----aGGGUGGGUGGGGC--GGUGAa -3'
miRNA:   3'- uguucgCUCGCUCACCCCGugCCACU- -5'
30231 5' -58.2 NC_006273.1 + 119513 0.66 0.888078
Target:  5'- gGCAAGCGucGUaGGUGcGGGUACGGa-- -3'
miRNA:   3'- -UGUUCGCu-CGcUCAC-CCCGUGCCacu -5'
30231 5' -58.2 NC_006273.1 + 212048 0.67 0.874556
Target:  5'- cGCGAGgGucGCGGGggugGGGGCGCccaggccgucccGGUGGc -3'
miRNA:   3'- -UGUUCgCu-CGCUCa---CCCCGUG------------CCACU- -5'
30231 5' -58.2 NC_006273.1 + 157301 0.67 0.874556
Target:  5'- aGCGgcGGCGguGGUGAcUGGGG-ACGGUGAu -3'
miRNA:   3'- -UGU--UCGC--UCGCUcACCCCgUGCCACU- -5'
30231 5' -58.2 NC_006273.1 + 232229 0.67 0.837335
Target:  5'- gGC-AGCGGGguCGGGguaGGGUACGGUGGg -3'
miRNA:   3'- -UGuUCGCUC--GCUCac-CCCGUGCCACU- -5'
30231 5' -58.2 NC_006273.1 + 130571 0.68 0.82935
Target:  5'- -gAAGUGGGgGAG-GGGGaaACGGUGGa -3'
miRNA:   3'- ugUUCGCUCgCUCaCCCCg-UGCCACU- -5'
30231 5' -58.2 NC_006273.1 + 234470 0.68 0.812889
Target:  5'- cGCGGccGCGAcCGAGgggcggGGGGCGCGGcGAc -3'
miRNA:   3'- -UGUU--CGCUcGCUCa-----CCCCGUGCCaCU- -5'
30231 5' -58.2 NC_006273.1 + 39577 0.68 0.812889
Target:  5'- cGCGGccGCGAcCGAGgggcggGGGGCGCGGcGAc -3'
miRNA:   3'- -UGUU--CGCUcGCUCa-----CCCCGUGCCaCU- -5'
30231 5' -58.2 NC_006273.1 + 156259 0.69 0.741593
Target:  5'- aACGAaCG-GCGGGUGGaGGCGCGGg-- -3'
miRNA:   3'- -UGUUcGCuCGCUCACC-CCGUGCCacu -5'
30231 5' -58.2 NC_006273.1 + 178720 0.7 0.722724
Target:  5'- aAUGAGC-AGCG-GUGGcGGCGgCGGUGAu -3'
miRNA:   3'- -UGUUCGcUCGCuCACC-CCGU-GCCACU- -5'
30231 5' -58.2 NC_006273.1 + 101993 0.7 0.713177
Target:  5'- aGCAGGCGccguggGGCuGAaagaggaggacGUGGGGCGCGGUa- -3'
miRNA:   3'- -UGUUCGC------UCG-CU-----------CACCCCGUGCCAcu -5'
30231 5' -58.2 NC_006273.1 + 72681 0.7 0.703566
Target:  5'- gGCAcGGCGAGCuGGUGGGGUgaagcACGGg-- -3'
miRNA:   3'- -UGU-UCGCUCGcUCACCCCG-----UGCCacu -5'
30231 5' -58.2 NC_006273.1 + 141701 0.7 0.684186
Target:  5'- -gGGGgGGGUGAGggggGGGGuUACGGUGGu -3'
miRNA:   3'- ugUUCgCUCGCUCa---CCCC-GUGCCACU- -5'
30231 5' -58.2 NC_006273.1 + 140644 0.7 0.674433
Target:  5'- -gGGGCGGGcCGGGaagGGGaGCugGGUGGg -3'
miRNA:   3'- ugUUCGCUC-GCUCa--CCC-CGugCCACU- -5'
30231 5' -58.2 NC_006273.1 + 140682 0.71 0.654837
Target:  5'- cGCAGGCGAcgacgGCGGGUGGuGGUGguggUGGUGGa -3'
miRNA:   3'- -UGUUCGCU-----CGCUCACC-CCGU----GCCACU- -5'
30231 5' -58.2 NC_006273.1 + 162583 0.74 0.500138
Target:  5'- aGCAGGCGAGCG-GUGuuGGuGCGCuGGUGGu -3'
miRNA:   3'- -UGUUCGCUCGCuCAC--CC-CGUG-CCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.