miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 55017 0.66 0.920173
Target:  5'- gGGCGCgUCGUCGUG--AUCC-CGGUCg -3'
miRNA:   3'- gCUGUG-AGCGGCGCguUAGGcGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 1241 0.66 0.920173
Target:  5'- -aGCACggGCCGCGCcAUgCGCaaguGGUCg -3'
miRNA:   3'- gcUGUGagCGGCGCGuUAgGCG----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 78696 0.66 0.920173
Target:  5'- gGGCAC-CGCCGCcgGAggCGCGGUUc -3'
miRNA:   3'- gCUGUGaGCGGCGcgUUagGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 1377 0.66 0.920173
Target:  5'- -aGCugUCGCCGCGgGAcgCGUGGaUCg -3'
miRNA:   3'- gcUGugAGCGGCGCgUUagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 155484 0.66 0.920173
Target:  5'- aGAUG-UCGCCGCccuuGCAAUCUGCGccGUCc -3'
miRNA:   3'- gCUGUgAGCGGCG----CGUUAGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 46539 0.66 0.920173
Target:  5'- cCGAgACU-GCCGCGCA--CCGuCGGg- -3'
miRNA:   3'- -GCUgUGAgCGGCGCGUuaGGC-GCCag -5'
30232 3' -58.3 NC_006273.1 + 208879 0.66 0.920173
Target:  5'- aGGCcgUUGCUGgGguGUCUGUGGUCg -3'
miRNA:   3'- gCUGugAGCGGCgCguUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 196134 0.66 0.920173
Target:  5'- -aGCACggGCCGCGCcAUgCGCaaguGGUCg -3'
miRNA:   3'- gcUGUGagCGGCGCGuUAgGCG----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 196270 0.66 0.920173
Target:  5'- -aGCugUCGCCGCGgGAcgCGUGGaUCg -3'
miRNA:   3'- gcUGugAGCGGCGCgUUagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 163234 0.66 0.920173
Target:  5'- gCGGCGcCUCaGCCuccuCGCAGUCCGCGu-- -3'
miRNA:   3'- -GCUGU-GAG-CGGc---GCGUUAGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 46070 0.66 0.920173
Target:  5'- --cCACcCGCCGacgcCGCAGgugCCGCGGUg -3'
miRNA:   3'- gcuGUGaGCGGC----GCGUUa--GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 108568 0.66 0.920173
Target:  5'- -aACugUUuuugGCCGUGCAAUUCGUGGg- -3'
miRNA:   3'- gcUGugAG----CGGCGCGUUAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 190904 0.66 0.914721
Target:  5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3'
miRNA:   3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5'
30232 3' -58.3 NC_006273.1 + 152148 0.66 0.914721
Target:  5'- uCGACGCUguccucgaUGCCgauGCGCGAUuuGCuGUCc -3'
miRNA:   3'- -GCUGUGA--------GCGG---CGCGUUAggCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 58471 0.66 0.914721
Target:  5'- uCGACGCUaG-CGCGCA--CCGCGG-Ca -3'
miRNA:   3'- -GCUGUGAgCgGCGCGUuaGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 116667 0.66 0.914721
Target:  5'- aGAUugUaCGCCGCGCuucggaaaAGUCCGagcuGGUUu -3'
miRNA:   3'- gCUGugA-GCGGCGCG--------UUAGGCg---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 103006 0.66 0.914721
Target:  5'- aGACGC-CGUCGCGCAG-CCGUaaaucaaaGUCg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUaGGCGc-------CAG- -5'
30232 3' -58.3 NC_006273.1 + 196143 0.66 0.914721
Target:  5'- gCGACACagcagCGUCGCGCcAUgCCGCGuGa- -3'
miRNA:   3'- -GCUGUGa----GCGGCGCGuUA-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 194915 0.66 0.914721
Target:  5'- uCGAC-CaCGCCGaCGUAucCCGCGGUa -3'
miRNA:   3'- -GCUGuGaGCGGC-GCGUuaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 148852 0.66 0.909053
Target:  5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3'
miRNA:   3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.