miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 116667 0.66 0.914721
Target:  5'- aGAUugUaCGCCGCGCuucggaaaAGUCCGagcuGGUUu -3'
miRNA:   3'- gCUGugA-GCGGCGCG--------UUAGGCg---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 46539 0.66 0.920173
Target:  5'- cCGAgACU-GCCGCGCA--CCGuCGGg- -3'
miRNA:   3'- -GCUgUGAgCGGCGCGUuaGGC-GCCag -5'
30232 3' -58.3 NC_006273.1 + 208879 0.66 0.920173
Target:  5'- aGGCcgUUGCUGgGguGUCUGUGGUCg -3'
miRNA:   3'- gCUGugAGCGGCgCguUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 148852 0.66 0.909053
Target:  5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3'
miRNA:   3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 103006 0.66 0.914721
Target:  5'- aGACGC-CGUCGCGCAG-CCGUaaaucaaaGUCg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUaGGCGc-------CAG- -5'
30232 3' -58.3 NC_006273.1 + 58471 0.66 0.914721
Target:  5'- uCGACGCUaG-CGCGCA--CCGCGG-Ca -3'
miRNA:   3'- -GCUGUGAgCgGCGCGUuaGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 217545 0.66 0.909053
Target:  5'- -aGCGCUCGUCGCGCuGUCgGgauaGGUg -3'
miRNA:   3'- gcUGUGAGCGGCGCGuUAGgCg---CCAg -5'
30232 3' -58.3 NC_006273.1 + 152148 0.66 0.914721
Target:  5'- uCGACGCUguccucgaUGCCgauGCGCGAUuuGCuGUCc -3'
miRNA:   3'- -GCUGUGA--------GCGG---CGCGUUAggCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 190904 0.66 0.914721
Target:  5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3'
miRNA:   3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5'
30232 3' -58.3 NC_006273.1 + 101750 0.66 0.909053
Target:  5'- aCGGCGgUCGCCggcggcauggGCGCG-UCgGgCGGUCu -3'
miRNA:   3'- -GCUGUgAGCGG----------CGCGUuAGgC-GCCAG- -5'
30232 3' -58.3 NC_006273.1 + 31398 0.66 0.908474
Target:  5'- gCGGCACgcccgaaUCGCCGCGgCucaCCGaGGUCu -3'
miRNA:   3'- -GCUGUG-------AGCGGCGC-GuuaGGCgCCAG- -5'
30232 3' -58.3 NC_006273.1 + 1953 0.66 0.89521
Target:  5'- aGGcCACggcCGCCGUGUAcaguuagaacgaccAUCCGCGGg- -3'
miRNA:   3'- gCU-GUGa--GCGGCGCGU--------------UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 140896 0.66 0.890777
Target:  5'- cCGGC-CUCGUCGCGCAccuguuuguuGUgCGCGcUCu -3'
miRNA:   3'- -GCUGuGAGCGGCGCGU----------UAgGCGCcAG- -5'
30232 3' -58.3 NC_006273.1 + 197297 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 55017 0.66 0.920173
Target:  5'- gGGCGCgUCGUCGUG--AUCC-CGGUCg -3'
miRNA:   3'- gCUGUG-AGCGGCGCguUAGGcGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 167430 0.66 0.909053
Target:  5'- aGugGCg-GgCGCGCucUCgGCGGUCa -3'
miRNA:   3'- gCugUGagCgGCGCGuuAGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 196402 0.66 0.903172
Target:  5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3'
miRNA:   3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 77328 0.66 0.903172
Target:  5'- uCGACAuCUCGCCGUacgGCAAcgaGCaGGUCu -3'
miRNA:   3'- -GCUGU-GAGCGGCG---CGUUaggCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 192637 0.66 0.903172
Target:  5'- gCGGCguaGCUCGCCGuCGCua--UGCGGcUCg -3'
miRNA:   3'- -GCUG---UGAGCGGC-GCGuuagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 66756 0.66 0.909053
Target:  5'- aGACGCUgGugcgcgacCCGgGCAG-CCGCGGcUCg -3'
miRNA:   3'- gCUGUGAgC--------GGCgCGUUaGGCGCC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.