miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 55017 0.66 0.920173
Target:  5'- gGGCGCgUCGUCGUG--AUCC-CGGUCg -3'
miRNA:   3'- gCUGUG-AGCGGCGCguUAGGcGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 190904 0.66 0.914721
Target:  5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3'
miRNA:   3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5'
30232 3' -58.3 NC_006273.1 + 37287 0.66 0.902572
Target:  5'- cCGACugUCGggGCGCAGaaacuuuUCCGuCGGUg -3'
miRNA:   3'- -GCUGugAGCggCGCGUU-------AGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 1377 0.66 0.920173
Target:  5'- -aGCugUCGCCGCGgGAcgCGUGGaUCg -3'
miRNA:   3'- gcUGugAGCGGCGCgUUagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 2404 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 114554 0.67 0.881609
Target:  5'- aGACGCgcgaaaacgccggCGUgGCGCucuaCGCGGUCg -3'
miRNA:   3'- gCUGUGa------------GCGgCGCGuuagGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 200779 0.67 0.869949
Target:  5'- -uGCGCUa-CgGCGCAcggcaaguacgacAUCCGCGGUCu -3'
miRNA:   3'- gcUGUGAgcGgCGCGU-------------UAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 136698 0.67 0.870651
Target:  5'- cCGGcCGgUCGCCGC-Cg--CCGCGGUUg -3'
miRNA:   3'- -GCU-GUgAGCGGCGcGuuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 14116 0.67 0.877559
Target:  5'- cCGGCugUUuCUGCGCAccgGUCCGaacgcuaGGUCg -3'
miRNA:   3'- -GCUGugAGcGGCGCGU---UAGGCg------CCAG- -5'
30232 3' -58.3 NC_006273.1 + 70653 0.67 0.877559
Target:  5'- aCGACACggugcUGCUGCGCGAcacgguggCgGCGGUg -3'
miRNA:   3'- -GCUGUGa----GCGGCGCGUUa-------GgCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 28563 0.67 0.884269
Target:  5'- uGGCucuucaUCGCCGUGCAGUCC-UGGg- -3'
miRNA:   3'- gCUGug----AGCGGCGCGUUAGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 205158 0.67 0.863548
Target:  5'- gGGCGCggaaaguguccUCGCCaCGCuggCCGCGGUg -3'
miRNA:   3'- gCUGUG-----------AGCGGcGCGuuaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 124054 0.67 0.884269
Target:  5'- gCGGCGCg-GCCGCGCua--UGCGGcCa -3'
miRNA:   3'- -GCUGUGagCGGCGCGuuagGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 10162 0.67 0.877559
Target:  5'- ---aACUcCGUCGUGaguUCCGCGGUCg -3'
miRNA:   3'- gcugUGA-GCGGCGCguuAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 213710 0.67 0.882277
Target:  5'- uGGCGCagGUCGUGCAcgucggccaccagcgCCGUGGUCu -3'
miRNA:   3'- gCUGUGagCGGCGCGUua-------------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 233869 0.67 0.856256
Target:  5'- -uGCGCaaGCaGCGUAGUCCGCGG-Cg -3'
miRNA:   3'- gcUGUGagCGgCGCGUUAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 148822 0.67 0.884269
Target:  5'- gCGGCugcaggGCUUGCUGUGCAAcCauauaGCGGUCc -3'
miRNA:   3'- -GCUG------UGAGCGGCGCGUUaGg----CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 463 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 235294 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 113617 0.67 0.884269
Target:  5'- cCGugGuaCG-CGCGCGAccCCGCGGUCa -3'
miRNA:   3'- -GCugUgaGCgGCGCGUUa-GGCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.