Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 209889 | 0.68 | 0.841127 |
Target: 5'- aCGuCGCgggCGCCGCGUAGcagaaggcgcUCaacaaCGCGGUCa -3' miRNA: 3'- -GCuGUGa--GCGGCGCGUU----------AG-----GCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 129244 | 0.68 | 0.825311 |
Target: 5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3' miRNA: 3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 152455 | 0.68 | 0.841127 |
Target: 5'- gGAUguGCUUGCCGCGCAG-CUGCGc-- -3' miRNA: 3'- gCUG--UGAGCGGCGCGUUaGGCGCcag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 88588 | 0.68 | 0.841127 |
Target: 5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3' miRNA: 3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 144478 | 0.68 | 0.841127 |
Target: 5'- cCGGCGuCUCGCCGgGC-AUCCaguuCGGUa -3' miRNA: 3'- -GCUGU-GAGCGGCgCGuUAGGc---GCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 176608 | 0.69 | 0.783107 |
Target: 5'- aCGugGCUCGCUGCGU-GUuuGCGcGUa -3' miRNA: 3'- -GCugUGAGCGGCGCGuUAggCGC-CAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 138689 | 0.69 | 0.74709 |
Target: 5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3' miRNA: 3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 72288 | 0.69 | 0.756251 |
Target: 5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3' miRNA: 3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 177255 | 0.69 | 0.774267 |
Target: 5'- gGAgGC-CGCUGCGCGugcCCGUGGUg -3' miRNA: 3'- gCUgUGaGCGGCGCGUua-GGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 41614 | 0.69 | 0.791823 |
Target: 5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3' miRNA: 3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 119140 | 0.69 | 0.783107 |
Target: 5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3' miRNA: 3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 129537 | 0.69 | 0.774267 |
Target: 5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3' miRNA: 3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 87506 | 0.69 | 0.774267 |
Target: 5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3' miRNA: 3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 142818 | 0.69 | 0.774267 |
Target: 5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3' miRNA: 3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 203113 | 0.69 | 0.746169 |
Target: 5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3' miRNA: 3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 41912 | 0.69 | 0.746169 |
Target: 5'- cCGGCauuauggACUUGCCGuCGCuGUCCGUGGa- -3' miRNA: 3'- -GCUG-------UGAGCGGC-GCGuUAGGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 215015 | 0.69 | 0.74709 |
Target: 5'- -cGCAC-CGCCGgguCGCGGUCCGcCGGUg -3' miRNA: 3'- gcUGUGaGCGGC---GCGUUAGGC-GCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 98613 | 0.69 | 0.756251 |
Target: 5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3' miRNA: 3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 202014 | 0.69 | 0.765313 |
Target: 5'- uGGCACUCGCUGCGacacggggaCGcgCCGCaGGaUCg -3' miRNA: 3'- gCUGUGAGCGGCGC---------GUuaGGCG-CC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 133179 | 0.69 | 0.765313 |
Target: 5'- -cGCGCUCGCuuaacgugaCGCGUuaucgacgCCGCGGUCu -3' miRNA: 3'- gcUGUGAGCG---------GCGCGuua-----GGCGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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