miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 64981 0.71 0.66148
Target:  5'- cCGucaACUCGuuGgCGCGcgCCGUGGUCu -3'
miRNA:   3'- -GCug-UGAGCggC-GCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 112552 0.71 0.65176
Target:  5'- uGACGCggUCGCCGCGuCAGcggCCGcCGGUg -3'
miRNA:   3'- gCUGUG--AGCGGCGC-GUUa--GGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 31242 0.71 0.65176
Target:  5'- gCGACACgguaCGCCGgGUAG-CCGCgcaGGUCa -3'
miRNA:   3'- -GCUGUGa---GCGGCgCGUUaGGCG---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 96061 0.7 0.713411
Target:  5'- gGGCACcgccucgguacccccUgGCCGagGCgAGUCCGCGGUCg -3'
miRNA:   3'- gCUGUG---------------AgCGGCg-CG-UUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 70101 0.7 0.719091
Target:  5'- gGACACagCGCCGCGCuggaugacgguGAUgCGCGGc- -3'
miRNA:   3'- gCUGUGa-GCGGCGCG-----------UUAgGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 175494 0.7 0.737838
Target:  5'- uCGuCACUCGCCGCGUugcGAcCUGCuguugGGUCg -3'
miRNA:   3'- -GCuGUGAGCGGCGCG---UUaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 26117 0.7 0.737838
Target:  5'- gGAUACgcCGCCGgGCg--CUGCGGUCc -3'
miRNA:   3'- gCUGUGa-GCGGCgCGuuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 214025 0.7 0.728502
Target:  5'- aGACGgUCGCCGUaaggcaGCAA-CUGCGGUg -3'
miRNA:   3'- gCUGUgAGCGGCG------CGUUaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 187943 0.7 0.709612
Target:  5'- cCGA-ACUCGCCGCGC---UCGCGGg- -3'
miRNA:   3'- -GCUgUGAGCGGCGCGuuaGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 17390 0.7 0.719091
Target:  5'- aGACGCggUUGCCGCGCGuauggCCGcCGGcCa -3'
miRNA:   3'- gCUGUG--AGCGGCGCGUua---GGC-GCCaG- -5'
30232 3' -58.3 NC_006273.1 + 21947 0.7 0.719091
Target:  5'- aCGGCGCUaGCgGCGCuaucAUCUGCGGa- -3'
miRNA:   3'- -GCUGUGAgCGgCGCGu---UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 138689 0.69 0.74709
Target:  5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3'
miRNA:   3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 203113 0.69 0.746169
Target:  5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3'
miRNA:   3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 87506 0.69 0.774267
Target:  5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3'
miRNA:   3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 124397 0.69 0.791823
Target:  5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 41614 0.69 0.791823
Target:  5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3'
miRNA:   3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 119140 0.69 0.783107
Target:  5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3'
miRNA:   3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 129537 0.69 0.774267
Target:  5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3'
miRNA:   3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 142818 0.69 0.774267
Target:  5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3'
miRNA:   3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 72288 0.69 0.756251
Target:  5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3'
miRNA:   3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.