miRNA display CGI


Results 41 - 60 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 72288 0.69 0.756251
Target:  5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3'
miRNA:   3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 98613 0.69 0.756251
Target:  5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3'
miRNA:   3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 215015 0.69 0.74709
Target:  5'- -cGCAC-CGCCGgguCGCGGUCCGcCGGUg -3'
miRNA:   3'- gcUGUGaGCGGC---GCGUUAGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 138689 0.69 0.74709
Target:  5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3'
miRNA:   3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 177255 0.69 0.774267
Target:  5'- gGAgGC-CGCUGCGCGugcCCGUGGUg -3'
miRNA:   3'- gCUgUGaGCGGCGCGUua-GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 203113 0.69 0.746169
Target:  5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3'
miRNA:   3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 124397 0.69 0.791823
Target:  5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 68814 0.68 0.808857
Target:  5'- gGACGCguaGCCG-GCGGcgCCGCGcGUCa -3'
miRNA:   3'- gCUGUGag-CGGCgCGUUa-GGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 56703 0.68 0.825311
Target:  5'- gGAacCAC-CGCCGC-CA--CCGCGGUCg -3'
miRNA:   3'- gCU--GUGaGCGGCGcGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 22005 0.68 0.841127
Target:  5'- gGGCuGCUgGCCGCGgGAUCgGUGGcCc -3'
miRNA:   3'- gCUG-UGAgCGGCGCgUUAGgCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 152455 0.68 0.841127
Target:  5'- gGAUguGCUUGCCGCGCAG-CUGCGc-- -3'
miRNA:   3'- gCUG--UGAGCGGCGCGUUaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 209889 0.68 0.841127
Target:  5'- aCGuCGCgggCGCCGCGUAGcagaaggcgcUCaacaaCGCGGUCa -3'
miRNA:   3'- -GCuGUGa--GCGGCGCGUU----------AG-----GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 17082 0.68 0.808857
Target:  5'- uGGCAggCG-CGCGUggUCCGCGG-Cg -3'
miRNA:   3'- gCUGUgaGCgGCGCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 144478 0.68 0.841127
Target:  5'- cCGGCGuCUCGCCGgGC-AUCCaguuCGGUa -3'
miRNA:   3'- -GCUGU-GAGCGGCgCGuUAGGc---GCCAg -5'
30232 3' -58.3 NC_006273.1 + 29195 0.68 0.825311
Target:  5'- cCGAgGCgCGCUGCGUGcUCCgaucggGCGGUCg -3'
miRNA:   3'- -GCUgUGaGCGGCGCGUuAGG------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 13081 0.68 0.799557
Target:  5'- uGGCAC-CGCCGaUGUcaguuggGAUCCGCGGaUCc -3'
miRNA:   3'- gCUGUGaGCGGC-GCG-------UUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 163178 0.68 0.800409
Target:  5'- -cGCGCUCGCUG-GUGG-CCGUGGUCu -3'
miRNA:   3'- gcUGUGAGCGGCgCGUUaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 196828 0.68 0.825311
Target:  5'- gGAUAC-CGUCGUGCGAccuuuugaCCGCGGUg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUa-------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 129244 0.68 0.825311
Target:  5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3'
miRNA:   3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 88588 0.68 0.841127
Target:  5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3'
miRNA:   3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.