Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 88588 | 0.68 | 0.841127 |
Target: 5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3' miRNA: 3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 14116 | 0.67 | 0.877559 |
Target: 5'- cCGGCugUUuCUGCGCAccgGUCCGaacgcuaGGUCg -3' miRNA: 3'- -GCUGugAGcGGCGCGU---UAGGCg------CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 64808 | 0.67 | 0.856256 |
Target: 5'- gCGACGaagUGCCGCGCcgccuggagUCGCGGUUc -3' miRNA: 3'- -GCUGUga-GCGGCGCGuua------GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 126066 | 0.67 | 0.856256 |
Target: 5'- -uACGC-CgGCCGCGUgccgGAUCCaGCGGUCc -3' miRNA: 3'- gcUGUGaG-CGGCGCG----UUAGG-CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 56221 | 0.67 | 0.856256 |
Target: 5'- uGGCGCUgCGCCGCcuaaagugucCGAUCCGCGcgggacGUCg -3' miRNA: 3'- gCUGUGA-GCGGCGc---------GUUAGGCGC------CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 206082 | 0.67 | 0.863548 |
Target: 5'- uCGGCACUCGauCCGCGUAGcccUCCaGCG-UCu -3' miRNA: 3'- -GCUGUGAGC--GGCGCGUU---AGG-CGCcAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 141765 | 0.67 | 0.867832 |
Target: 5'- gGAUGCgcgaaGCUGCGCAGgccgccgcucaagCCGCGGUa -3' miRNA: 3'- gCUGUGag---CGGCGCGUUa------------GGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 68746 | 0.67 | 0.870651 |
Target: 5'- aCGGCGCguccaCGCCGCGgGucgacaugGUCCaggcgguggaaGCGGUCu -3' miRNA: 3'- -GCUGUGa----GCGGCGCgU--------UAGG-----------CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 153784 | 0.67 | 0.870651 |
Target: 5'- uCGGC-CUcCGCCGCGg---CCGCGGcCg -3' miRNA: 3'- -GCUGuGA-GCGGCGCguuaGGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 235294 | 0.67 | 0.877559 |
Target: 5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3' miRNA: 3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 114554 | 0.67 | 0.881609 |
Target: 5'- aGACGCgcgaaaacgccggCGUgGCGCucuaCGCGGUCg -3' miRNA: 3'- gCUGUGa------------GCGgCGCGuuagGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 113617 | 0.67 | 0.884269 |
Target: 5'- cCGugGuaCG-CGCGCGAccCCGCGGUCa -3' miRNA: 3'- -GCugUgaGCgGCGCGUUa-GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 151329 | 0.67 | 0.884269 |
Target: 5'- uGGCACUcCGCC-CGCcgcUUCGCGGcUCa -3' miRNA: 3'- gCUGUGA-GCGGcGCGuu-AGGCGCC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 463 | 0.67 | 0.877559 |
Target: 5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3' miRNA: 3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 233869 | 0.67 | 0.856256 |
Target: 5'- -uGCGCaaGCaGCGUAGUCCGCGG-Cg -3' miRNA: 3'- gcUGUGagCGgCGCGUUAGGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 205158 | 0.67 | 0.863548 |
Target: 5'- gGGCGCggaaaguguccUCGCCaCGCuggCCGCGGUg -3' miRNA: 3'- gCUGUG-----------AGCGGcGCGuuaGGCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 200779 | 0.67 | 0.869949 |
Target: 5'- -uGCGCUa-CgGCGCAcggcaaguacgacAUCCGCGGUCu -3' miRNA: 3'- gcUGUGAgcGgCGCGU-------------UAGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 136698 | 0.67 | 0.870651 |
Target: 5'- cCGGcCGgUCGCCGC-Cg--CCGCGGUUg -3' miRNA: 3'- -GCU-GUgAGCGGCGcGuuaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 10162 | 0.67 | 0.877559 |
Target: 5'- ---aACUcCGUCGUGaguUCCGCGGUCg -3' miRNA: 3'- gcugUGA-GCGGCGCguuAGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 40401 | 0.67 | 0.877559 |
Target: 5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3' miRNA: 3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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