Results 81 - 100 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 463 | 0.67 | 0.877559 |
Target: 5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3' miRNA: 3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 153784 | 0.67 | 0.870651 |
Target: 5'- uCGGC-CUcCGCCGCGg---CCGCGGcCg -3' miRNA: 3'- -GCUGuGA-GCGGCGCguuaGGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 206082 | 0.67 | 0.863548 |
Target: 5'- uCGGCACUCGauCCGCGUAGcccUCCaGCG-UCu -3' miRNA: 3'- -GCUGUGAGC--GGCGCGUU---AGG-CGCcAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 141765 | 0.67 | 0.867832 |
Target: 5'- gGAUGCgcgaaGCUGCGCAGgccgccgcucaagCCGCGGUa -3' miRNA: 3'- gCUGUGag---CGGCGCGUUa------------GGCGCCAg -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 148822 | 0.67 | 0.884269 |
Target: 5'- gCGGCugcaggGCUUGCUGUGCAAcCauauaGCGGUCc -3' miRNA: 3'- -GCUG------UGAGCGGCGCGUUaGg----CGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 124054 | 0.67 | 0.884269 |
Target: 5'- gCGGCGCg-GCCGCGCua--UGCGGcCa -3' miRNA: 3'- -GCUGUGagCGGCGCGuuagGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 28563 | 0.67 | 0.884269 |
Target: 5'- uGGCucuucaUCGCCGUGCAGUCC-UGGg- -3' miRNA: 3'- gCUGug----AGCGGCGCGUUAGGcGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 103006 | 0.66 | 0.914721 |
Target: 5'- aGACGC-CGUCGCGCAG-CCGUaaaucaaaGUCg -3' miRNA: 3'- gCUGUGaGCGGCGCGUUaGGCGc-------CAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 55017 | 0.66 | 0.920173 |
Target: 5'- gGGCGCgUCGUCGUG--AUCC-CGGUCg -3' miRNA: 3'- gCUGUG-AGCGGCGCguUAGGcGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 190904 | 0.66 | 0.914721 |
Target: 5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3' miRNA: 3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 152148 | 0.66 | 0.914721 |
Target: 5'- uCGACGCUguccucgaUGCCgauGCGCGAUuuGCuGUCc -3' miRNA: 3'- -GCUGUGA--------GCGG---CGCGUUAggCGcCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 46539 | 0.66 | 0.920173 |
Target: 5'- cCGAgACU-GCCGCGCA--CCGuCGGg- -3' miRNA: 3'- -GCUgUGAgCGGCGCGUuaGGC-GCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 58471 | 0.66 | 0.914721 |
Target: 5'- uCGACGCUaG-CGCGCA--CCGCGG-Ca -3' miRNA: 3'- -GCUGUGAgCgGCGCGUuaGGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 66756 | 0.66 | 0.909053 |
Target: 5'- aGACGCUgGugcgcgacCCGgGCAG-CCGCGGcUCg -3' miRNA: 3'- gCUGUGAgC--------GGCgCGUUaGGCGCC-AG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 31398 | 0.66 | 0.908474 |
Target: 5'- gCGGCACgcccgaaUCGCCGCGgCucaCCGaGGUCu -3' miRNA: 3'- -GCUGUG-------AGCGGCGC-GuuaGGCgCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 167430 | 0.66 | 0.909053 |
Target: 5'- aGugGCg-GgCGCGCucUCgGCGGUCa -3' miRNA: 3'- gCugUGagCgGCGCGuuAGgCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 116667 | 0.66 | 0.914721 |
Target: 5'- aGAUugUaCGCCGCGCuucggaaaAGUCCGagcuGGUUu -3' miRNA: 3'- gCUGugA-GCGGCGCG--------UUAGGCg---CCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 148852 | 0.66 | 0.909053 |
Target: 5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3' miRNA: 3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 197297 | 0.66 | 0.909053 |
Target: 5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3' miRNA: 3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 217545 | 0.66 | 0.909053 |
Target: 5'- -aGCGCUCGUCGCGCuGUCgGgauaGGUg -3' miRNA: 3'- gcUGUGAGCGGCGCGuUAGgCg---CCAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home