miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 216580 1.1 0.00265
Target:  5'- cCGACACUCGCCGCGCAAUCCGCGGUCg -3'
miRNA:   3'- -GCUGUGAGCGGCGCGUUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 90935 0.77 0.374417
Target:  5'- aCGGCACgcgcaccgccucgcCGCCGUGCAGUcgcaCCGUGGUCg -3'
miRNA:   3'- -GCUGUGa-------------GCGGCGCGUUA----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 125314 0.76 0.379099
Target:  5'- gGugACUCGCCGC-UAAcCUGCGGUCg -3'
miRNA:   3'- gCugUGAGCGGCGcGUUaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 204722 0.74 0.471527
Target:  5'- cCGAgGCgCGcCCGCuGCGAUCUGCGGUUg -3'
miRNA:   3'- -GCUgUGaGC-GGCG-CGUUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 162257 0.74 0.507881
Target:  5'- cCGGCGCaguUUGCgGCGCAgacGUCgGCGGUCc -3'
miRNA:   3'- -GCUGUG---AGCGgCGCGU---UAGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 901 0.73 0.535906
Target:  5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3'
miRNA:   3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 195793 0.73 0.535906
Target:  5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3'
miRNA:   3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 218402 0.73 0.564452
Target:  5'- gCGAaACU-GCCGCGCGuagUCGCGGUCu -3'
miRNA:   3'- -GCUgUGAgCGGCGCGUua-GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 120933 0.73 0.564452
Target:  5'- aGGCGCUCGCCaugGCGCcg-CCGcCGGUg -3'
miRNA:   3'- gCUGUGAGCGG---CGCGuuaGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 149511 0.72 0.593382
Target:  5'- uGGCGCUUGuuGCGCGggCUGCGucGUCa -3'
miRNA:   3'- gCUGUGAGCggCGCGUuaGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 174112 0.72 0.603084
Target:  5'- aCGGC-CUCgGCCGCGCGcgCCGCGc-- -3'
miRNA:   3'- -GCUGuGAG-CGGCGCGUuaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 94211 0.72 0.612806
Target:  5'- cCGGCguGCcCGCCgccccccgGCGCAGUCCGCGG-Ca -3'
miRNA:   3'- -GCUG--UGaGCGG--------CGCGUUAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 195295 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 402 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 235233 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 112552 0.71 0.65176
Target:  5'- uGACGCggUCGCCGCGuCAGcggCCGcCGGUg -3'
miRNA:   3'- gCUGUG--AGCGGCGC-GUUa--GGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 31242 0.71 0.65176
Target:  5'- gCGACACgguaCGCCGgGUAG-CCGCgcaGGUCa -3'
miRNA:   3'- -GCUGUGa---GCGGCgCGUUaGGCG---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 64981 0.71 0.66148
Target:  5'- cCGucaACUCGuuGgCGCGcgCCGUGGUCu -3'
miRNA:   3'- -GCug-UGAGCggC-GCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 19692 0.71 0.67118
Target:  5'- cCGGCG-UUGCCGC-CAugucgcUCCGCGGUCa -3'
miRNA:   3'- -GCUGUgAGCGGCGcGUu-----AGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 192753 0.71 0.68085
Target:  5'- uGGCAgaCGCgGUgGCAGUuuGCGGUCu -3'
miRNA:   3'- gCUGUgaGCGgCG-CGUUAggCGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.