miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 87506 0.69 0.774267
Target:  5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3'
miRNA:   3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 129537 0.69 0.774267
Target:  5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3'
miRNA:   3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 142818 0.69 0.774267
Target:  5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3'
miRNA:   3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 176608 0.69 0.783107
Target:  5'- aCGugGCUCGCUGCGU-GUuuGCGcGUa -3'
miRNA:   3'- -GCugUGAGCGGCGCGuUAggCGC-CAg -5'
30232 3' -58.3 NC_006273.1 + 119140 0.69 0.783107
Target:  5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3'
miRNA:   3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 41614 0.69 0.791823
Target:  5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3'
miRNA:   3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 124397 0.69 0.791823
Target:  5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 13081 0.68 0.799557
Target:  5'- uGGCAC-CGCCGaUGUcaguuggGAUCCGCGGaUCc -3'
miRNA:   3'- gCUGUGaGCGGC-GCG-------UUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 163178 0.68 0.800409
Target:  5'- -cGCGCUCGCUG-GUGG-CCGUGGUCu -3'
miRNA:   3'- gcUGUGAGCGGCgCGUUaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 68814 0.68 0.808857
Target:  5'- gGACGCguaGCCG-GCGGcgCCGCGcGUCa -3'
miRNA:   3'- gCUGUGag-CGGCgCGUUa-GGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 17082 0.68 0.808857
Target:  5'- uGGCAggCG-CGCGUggUCCGCGG-Cg -3'
miRNA:   3'- gCUGUgaGCgGCGCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 196828 0.68 0.825311
Target:  5'- gGAUAC-CGUCGUGCGAccuuuugaCCGCGGUg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUa-------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 129244 0.68 0.825311
Target:  5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3'
miRNA:   3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 56703 0.68 0.825311
Target:  5'- gGAacCAC-CGCCGC-CA--CCGCGGUCg -3'
miRNA:   3'- gCU--GUGaGCGGCGcGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 29195 0.68 0.825311
Target:  5'- cCGAgGCgCGCUGCGUGcUCCgaucggGCGGUCg -3'
miRNA:   3'- -GCUgUGaGCGGCGCGUuAGG------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 209889 0.68 0.841127
Target:  5'- aCGuCGCgggCGCCGCGUAGcagaaggcgcUCaacaaCGCGGUCa -3'
miRNA:   3'- -GCuGUGa--GCGGCGCGUU----------AG-----GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 144478 0.68 0.841127
Target:  5'- cCGGCGuCUCGCCGgGC-AUCCaguuCGGUa -3'
miRNA:   3'- -GCUGU-GAGCGGCgCGuUAGGc---GCCAg -5'
30232 3' -58.3 NC_006273.1 + 152455 0.68 0.841127
Target:  5'- gGAUguGCUUGCCGCGCAG-CUGCGc-- -3'
miRNA:   3'- gCUG--UGAGCGGCGCGUUaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 88588 0.68 0.841127
Target:  5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3'
miRNA:   3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 22005 0.68 0.841127
Target:  5'- gGGCuGCUgGCCGCGgGAUCgGUGGcCc -3'
miRNA:   3'- gCUG-UGAgCGGCGCgUUAGgCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.