Results 81 - 100 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 151329 | 0.67 | 0.884269 |
Target: 5'- uGGCACUcCGCC-CGCcgcUUCGCGGcUCa -3' miRNA: 3'- gCUGUGA-GCGGcGCGuu-AGGCGCC-AG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 113617 | 0.67 | 0.884269 |
Target: 5'- cCGugGuaCG-CGCGCGAccCCGCGGUCa -3' miRNA: 3'- -GCugUgaGCgGCGCGUUa-GGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 124054 | 0.67 | 0.884269 |
Target: 5'- gCGGCGCg-GCCGCGCua--UGCGGcCa -3' miRNA: 3'- -GCUGUGagCGGCGCGuuagGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 198323 | 0.67 | 0.884269 |
Target: 5'- uGGCcCUCGCaGUGCAucuaCGUGGUCg -3' miRNA: 3'- gCUGuGAGCGgCGCGUuag-GCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 148822 | 0.67 | 0.884269 |
Target: 5'- gCGGCugcaggGCUUGCUGUGCAAcCauauaGCGGUCc -3' miRNA: 3'- -GCUG------UGAGCGGCGCGUUaGg----CGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 105850 | 0.67 | 0.884269 |
Target: 5'- cCGAgGCggCGCgGCGCAGcgccggccauucUCCG-GGUCg -3' miRNA: 3'- -GCUgUGa-GCGgCGCGUU------------AGGCgCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 28563 | 0.67 | 0.884269 |
Target: 5'- uGGCucuucaUCGCCGUGCAGUCC-UGGg- -3' miRNA: 3'- gCUGug----AGCGGCGCGUUAGGcGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 171699 | 0.66 | 0.890136 |
Target: 5'- cCGGCGCU-GCUGCGCAucacGUCCucgaucaGCGGg- -3' miRNA: 3'- -GCUGUGAgCGGCGCGU----UAGG-------CGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 68187 | 0.66 | 0.890777 |
Target: 5'- uGACGCUguuuaCGCCG-GCc-UCCGCGGcCg -3' miRNA: 3'- gCUGUGA-----GCGGCgCGuuAGGCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 140896 | 0.66 | 0.890777 |
Target: 5'- cCGGC-CUCGUCGCGCAccuguuuguuGUgCGCGcUCu -3' miRNA: 3'- -GCUGuGAGCGGCGCGU----------UAgGCGCcAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 25418 | 0.66 | 0.893323 |
Target: 5'- uCGACugUUGCCGCGUGgcgcugcacaccuauGgcgCCGUGGg- -3' miRNA: 3'- -GCUGugAGCGGCGCGU---------------Ua--GGCGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 1953 | 0.66 | 0.89521 |
Target: 5'- aGGcCACggcCGCCGUGUAcaguuagaacgaccAUCCGCGGg- -3' miRNA: 3'- gCU-GUGa--GCGGCGCGU--------------UAGGCGCCag -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 91224 | 0.66 | 0.897079 |
Target: 5'- uCGGCGauCUCGgCGCGCGAggcuUCgGCGG-Cg -3' miRNA: 3'- -GCUGU--GAGCgGCGCGUU----AGgCGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 30657 | 0.66 | 0.897079 |
Target: 5'- aGACGacgCGCCGgGCGGcuUCCuGCGGcCg -3' miRNA: 3'- gCUGUga-GCGGCgCGUU--AGG-CGCCaG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 104632 | 0.66 | 0.90197 |
Target: 5'- gCGACGucCUCGgaGCGCAAgaaacaccguaaCCGCGGUUu -3' miRNA: 3'- -GCUGU--GAGCggCGCGUUa-----------GGCGCCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 37287 | 0.66 | 0.902572 |
Target: 5'- cCGACugUCGggGCGCAGaaacuuuUCCGuCGGUg -3' miRNA: 3'- -GCUGugAGCggCGCGUU-------AGGC-GCCAg -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 196402 | 0.66 | 0.903172 |
Target: 5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3' miRNA: 3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 77328 | 0.66 | 0.903172 |
Target: 5'- uCGACAuCUCGCCGUacgGCAAcgaGCaGGUCu -3' miRNA: 3'- -GCUGU-GAGCGGCG---CGUUaggCG-CCAG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 192637 | 0.66 | 0.903172 |
Target: 5'- gCGGCguaGCUCGCCGuCGCua--UGCGGcUCg -3' miRNA: 3'- -GCUG---UGAGCGGC-GCGuuagGCGCC-AG- -5' |
|||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 1509 | 0.66 | 0.903172 |
Target: 5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3' miRNA: 3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home