miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 217545 0.66 0.909053
Target:  5'- -aGCGCUCGUCGCGCuGUCgGgauaGGUg -3'
miRNA:   3'- gcUGUGAGCGGCGCGuUAGgCg---CCAg -5'
30232 3' -58.3 NC_006273.1 + 167430 0.66 0.909053
Target:  5'- aGugGCg-GgCGCGCucUCgGCGGUCa -3'
miRNA:   3'- gCugUGagCgGCGCGuuAGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 2404 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 101750 0.66 0.909053
Target:  5'- aCGGCGgUCGCCggcggcauggGCGCG-UCgGgCGGUCu -3'
miRNA:   3'- -GCUGUgAGCGG----------CGCGUuAGgC-GCCAG- -5'
30232 3' -58.3 NC_006273.1 + 148852 0.66 0.909053
Target:  5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3'
miRNA:   3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 197297 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 66756 0.66 0.909053
Target:  5'- aGACGCUgGugcgcgacCCGgGCAG-CCGCGGcUCg -3'
miRNA:   3'- gCUGUGAgC--------GGCgCGUUaGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 165673 0.66 0.908474
Target:  5'- aCGuCACcaccuUCGCCGCugccuacGCGAUCgGCGGcCg -3'
miRNA:   3'- -GCuGUG-----AGCGGCG-------CGUUAGgCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 31398 0.66 0.908474
Target:  5'- gCGGCACgcccgaaUCGCCGCGgCucaCCGaGGUCu -3'
miRNA:   3'- -GCUGUG-------AGCGGCGC-GuuaGGCgCCAG- -5'
30232 3' -58.3 NC_006273.1 + 1509 0.66 0.903172
Target:  5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3'
miRNA:   3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 113170 0.66 0.903172
Target:  5'- -uACACcCGUaCGCGCAggcagcauggaGUCgCGCGGUCg -3'
miRNA:   3'- gcUGUGaGCG-GCGCGU-----------UAG-GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 196402 0.66 0.903172
Target:  5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3'
miRNA:   3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 77328 0.66 0.903172
Target:  5'- uCGACAuCUCGCCGUacgGCAAcgaGCaGGUCu -3'
miRNA:   3'- -GCUGU-GAGCGGCG---CGUUaggCG-CCAG- -5'
30232 3' -58.3 NC_006273.1 + 192637 0.66 0.903172
Target:  5'- gCGGCguaGCUCGCCGuCGCua--UGCGGcUCg -3'
miRNA:   3'- -GCUG---UGAGCGGC-GCGuuagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 179063 0.66 0.903172
Target:  5'- aCGugACUCaauuCCGUGUAuaacuaacguGUCCGCGGa- -3'
miRNA:   3'- -GCugUGAGc---GGCGCGU----------UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 135677 0.66 0.903172
Target:  5'- gGACAC-CGUCGUcuaCAAgacgaCCGCGGUCc -3'
miRNA:   3'- gCUGUGaGCGGCGc--GUUa----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 37287 0.66 0.902572
Target:  5'- cCGACugUCGggGCGCAGaaacuuuUCCGuCGGUg -3'
miRNA:   3'- -GCUGugAGCggCGCGUU-------AGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 104632 0.66 0.90197
Target:  5'- gCGACGucCUCGgaGCGCAAgaaacaccguaaCCGCGGUUu -3'
miRNA:   3'- -GCUGU--GAGCggCGCGUUa-----------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 30657 0.66 0.897079
Target:  5'- aGACGacgCGCCGgGCGGcuUCCuGCGGcCg -3'
miRNA:   3'- gCUGUga-GCGGCgCGUU--AGG-CGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 91224 0.66 0.897079
Target:  5'- uCGGCGauCUCGgCGCGCGAggcuUCgGCGG-Cg -3'
miRNA:   3'- -GCUGU--GAGCgGCGCGUU----AGgCGCCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.