miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 1953 0.66 0.89521
Target:  5'- aGGcCACggcCGCCGUGUAcaguuagaacgaccAUCCGCGGg- -3'
miRNA:   3'- gCU-GUGa--GCGGCGCGU--------------UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 25418 0.66 0.893323
Target:  5'- uCGACugUUGCCGCGUGgcgcugcacaccuauGgcgCCGUGGg- -3'
miRNA:   3'- -GCUGugAGCGGCGCGU---------------Ua--GGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 68187 0.66 0.890777
Target:  5'- uGACGCUguuuaCGCCG-GCc-UCCGCGGcCg -3'
miRNA:   3'- gCUGUGA-----GCGGCgCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 140896 0.66 0.890777
Target:  5'- cCGGC-CUCGUCGCGCAccuguuuguuGUgCGCGcUCu -3'
miRNA:   3'- -GCUGuGAGCGGCGCGU----------UAgGCGCcAG- -5'
30232 3' -58.3 NC_006273.1 + 171699 0.66 0.890136
Target:  5'- cCGGCGCU-GCUGCGCAucacGUCCucgaucaGCGGg- -3'
miRNA:   3'- -GCUGUGAgCGGCGCGU----UAGG-------CGCCag -5'
30232 3' -58.3 NC_006273.1 + 28563 0.67 0.884269
Target:  5'- uGGCucuucaUCGCCGUGCAGUCC-UGGg- -3'
miRNA:   3'- gCUGug----AGCGGCGCGUUAGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 105850 0.67 0.884269
Target:  5'- cCGAgGCggCGCgGCGCAGcgccggccauucUCCG-GGUCg -3'
miRNA:   3'- -GCUgUGa-GCGgCGCGUU------------AGGCgCCAG- -5'
30232 3' -58.3 NC_006273.1 + 198323 0.67 0.884269
Target:  5'- uGGCcCUCGCaGUGCAucuaCGUGGUCg -3'
miRNA:   3'- gCUGuGAGCGgCGCGUuag-GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 124054 0.67 0.884269
Target:  5'- gCGGCGCg-GCCGCGCua--UGCGGcCa -3'
miRNA:   3'- -GCUGUGagCGGCGCGuuagGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 113617 0.67 0.884269
Target:  5'- cCGugGuaCG-CGCGCGAccCCGCGGUCa -3'
miRNA:   3'- -GCugUgaGCgGCGCGUUa-GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 148822 0.67 0.884269
Target:  5'- gCGGCugcaggGCUUGCUGUGCAAcCauauaGCGGUCc -3'
miRNA:   3'- -GCUG------UGAGCGGCGCGUUaGg----CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 151329 0.67 0.884269
Target:  5'- uGGCACUcCGCC-CGCcgcUUCGCGGcUCa -3'
miRNA:   3'- gCUGUGA-GCGGcGCGuu-AGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 213710 0.67 0.882277
Target:  5'- uGGCGCagGUCGUGCAcgucggccaccagcgCCGUGGUCu -3'
miRNA:   3'- gCUGUGagCGGCGCGUua-------------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 114554 0.67 0.881609
Target:  5'- aGACGCgcgaaaacgccggCGUgGCGCucuaCGCGGUCg -3'
miRNA:   3'- gCUGUGa------------GCGgCGCGuuagGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 40401 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 463 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 235294 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 10162 0.67 0.877559
Target:  5'- ---aACUcCGUCGUGaguUCCGCGGUCg -3'
miRNA:   3'- gcugUGA-GCGGCGCguuAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 14116 0.67 0.877559
Target:  5'- cCGGCugUUuCUGCGCAccgGUCCGaacgcuaGGUCg -3'
miRNA:   3'- -GCUGugAGcGGCGCGU---UAGGCg------CCAG- -5'
30232 3' -58.3 NC_006273.1 + 70653 0.67 0.877559
Target:  5'- aCGACACggugcUGCUGCGCGAcacgguggCgGCGGUg -3'
miRNA:   3'- -GCUGUGa----GCGGCGCGUUa-------GgCGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.