miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 153784 0.67 0.870651
Target:  5'- uCGGC-CUcCGCCGCGg---CCGCGGcCg -3'
miRNA:   3'- -GCUGuGA-GCGGCGCguuaGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 136698 0.67 0.870651
Target:  5'- cCGGcCGgUCGCCGC-Cg--CCGCGGUUg -3'
miRNA:   3'- -GCU-GUgAGCGGCGcGuuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 68746 0.67 0.870651
Target:  5'- aCGGCGCguccaCGCCGCGgGucgacaugGUCCaggcgguggaaGCGGUCu -3'
miRNA:   3'- -GCUGUGa----GCGGCGCgU--------UAGG-----------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 200779 0.67 0.869949
Target:  5'- -uGCGCUa-CgGCGCAcggcaaguacgacAUCCGCGGUCu -3'
miRNA:   3'- gcUGUGAgcGgCGCGU-------------UAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 141765 0.67 0.867832
Target:  5'- gGAUGCgcgaaGCUGCGCAGgccgccgcucaagCCGCGGUa -3'
miRNA:   3'- gCUGUGag---CGGCGCGUUa------------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 206082 0.67 0.863548
Target:  5'- uCGGCACUCGauCCGCGUAGcccUCCaGCG-UCu -3'
miRNA:   3'- -GCUGUGAGC--GGCGCGUU---AGG-CGCcAG- -5'
30232 3' -58.3 NC_006273.1 + 205158 0.67 0.863548
Target:  5'- gGGCGCggaaaguguccUCGCCaCGCuggCCGCGGUg -3'
miRNA:   3'- gCUGUG-----------AGCGGcGCGuuaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 233869 0.67 0.856256
Target:  5'- -uGCGCaaGCaGCGUAGUCCGCGG-Cg -3'
miRNA:   3'- gcUGUGagCGgCGCGUUAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 64808 0.67 0.856256
Target:  5'- gCGACGaagUGCCGCGCcgccuggagUCGCGGUUc -3'
miRNA:   3'- -GCUGUga-GCGGCGCGuua------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 56221 0.67 0.856256
Target:  5'- uGGCGCUgCGCCGCcuaaagugucCGAUCCGCGcgggacGUCg -3'
miRNA:   3'- gCUGUGA-GCGGCGc---------GUUAGGCGC------CAG- -5'
30232 3' -58.3 NC_006273.1 + 126066 0.67 0.856256
Target:  5'- -uACGC-CgGCCGCGUgccgGAUCCaGCGGUCc -3'
miRNA:   3'- gcUGUGaG-CGGCGCG----UUAGG-CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 144478 0.68 0.841127
Target:  5'- cCGGCGuCUCGCCGgGC-AUCCaguuCGGUa -3'
miRNA:   3'- -GCUGU-GAGCGGCgCGuUAGGc---GCCAg -5'
30232 3' -58.3 NC_006273.1 + 209889 0.68 0.841127
Target:  5'- aCGuCGCgggCGCCGCGUAGcagaaggcgcUCaacaaCGCGGUCa -3'
miRNA:   3'- -GCuGUGa--GCGGCGCGUU----------AG-----GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 110946 0.68 0.841127
Target:  5'- uCGGCGa--GCCGCGCAcgCCcgcGCGGcCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUuaGG---CGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 152455 0.68 0.841127
Target:  5'- gGAUguGCUUGCCGCGCAG-CUGCGc-- -3'
miRNA:   3'- gCUG--UGAGCGGCGCGUUaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 22005 0.68 0.841127
Target:  5'- gGGCuGCUgGCCGCGgGAUCgGUGGcCc -3'
miRNA:   3'- gCUG-UGAgCGGCGCgUUAGgCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 88588 0.68 0.841127
Target:  5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3'
miRNA:   3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 196828 0.68 0.825311
Target:  5'- gGAUAC-CGUCGUGCGAccuuuugaCCGCGGUg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUa-------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 29195 0.68 0.825311
Target:  5'- cCGAgGCgCGCUGCGUGcUCCgaucggGCGGUCg -3'
miRNA:   3'- -GCUgUGaGCGGCGCGUuAGG------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 129244 0.68 0.825311
Target:  5'- gCGuGCGC-CGCCGCGgcCAAgCCGCuGGUCa -3'
miRNA:   3'- -GC-UGUGaGCGGCGC--GUUaGGCG-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.