miRNA display CGI


Results 81 - 100 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 196828 0.68 0.825311
Target:  5'- gGAUAC-CGUCGUGCGAccuuuugaCCGCGGUg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUa-------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 68814 0.68 0.808857
Target:  5'- gGACGCguaGCCG-GCGGcgCCGCGcGUCa -3'
miRNA:   3'- gCUGUGag-CGGCgCGUUa-GGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 17082 0.68 0.808857
Target:  5'- uGGCAggCG-CGCGUggUCCGCGG-Cg -3'
miRNA:   3'- gCUGUgaGCgGCGCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 163178 0.68 0.800409
Target:  5'- -cGCGCUCGCUG-GUGG-CCGUGGUCu -3'
miRNA:   3'- gcUGUGAGCGGCgCGUUaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 13081 0.68 0.799557
Target:  5'- uGGCAC-CGCCGaUGUcaguuggGAUCCGCGGaUCc -3'
miRNA:   3'- gCUGUGaGCGGC-GCG-------UUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 124397 0.69 0.791823
Target:  5'- cCGACA---GCCGCGCGAUCuCGUcGUCg -3'
miRNA:   3'- -GCUGUgagCGGCGCGUUAG-GCGcCAG- -5'
30232 3' -58.3 NC_006273.1 + 41614 0.69 0.791823
Target:  5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3'
miRNA:   3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 176608 0.69 0.783107
Target:  5'- aCGugGCUCGCUGCGU-GUuuGCGcGUa -3'
miRNA:   3'- -GCugUGAGCGGCGCGuUAggCGC-CAg -5'
30232 3' -58.3 NC_006273.1 + 119140 0.69 0.783107
Target:  5'- gGAgACggCGCCGCGCAugacguugcUCCGUGGa- -3'
miRNA:   3'- gCUgUGa-GCGGCGCGUu--------AGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 177255 0.69 0.774267
Target:  5'- gGAgGC-CGCUGCGCGugcCCGUGGUg -3'
miRNA:   3'- gCUgUGaGCGGCGCGUua-GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 129537 0.69 0.774267
Target:  5'- cCGGCGCUgCGCCGCGCcg-CCuCGGc- -3'
miRNA:   3'- -GCUGUGA-GCGGCGCGuuaGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 87506 0.69 0.774267
Target:  5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3'
miRNA:   3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 142818 0.69 0.774267
Target:  5'- gGGCACg-GgCGUGCA--CCGCGGUCu -3'
miRNA:   3'- gCUGUGagCgGCGCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 133179 0.69 0.765313
Target:  5'- -cGCGCUCGCuuaacgugaCGCGUuaucgacgCCGCGGUCu -3'
miRNA:   3'- gcUGUGAGCG---------GCGCGuua-----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 202014 0.69 0.765313
Target:  5'- uGGCACUCGCUGCGacacggggaCGcgCCGCaGGaUCg -3'
miRNA:   3'- gCUGUGAGCGGCGC---------GUuaGGCG-CC-AG- -5'
30232 3' -58.3 NC_006273.1 + 72288 0.69 0.756251
Target:  5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3'
miRNA:   3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 98613 0.69 0.756251
Target:  5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3'
miRNA:   3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 138689 0.69 0.74709
Target:  5'- uGGCAaaaagCGCCGUGCucuuggcgCCGCGGUg -3'
miRNA:   3'- gCUGUga---GCGGCGCGuua-----GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 215015 0.69 0.74709
Target:  5'- -cGCAC-CGCCGgguCGCGGUCCGcCGGUg -3'
miRNA:   3'- gcUGUGaGCGGC---GCGUUAGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 203113 0.69 0.746169
Target:  5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3'
miRNA:   3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.