miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 402 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 463 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 901 0.73 0.535906
Target:  5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3'
miRNA:   3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 1241 0.66 0.920173
Target:  5'- -aGCACggGCCGCGCcAUgCGCaaguGGUCg -3'
miRNA:   3'- gcUGUGagCGGCGCGuUAgGCG----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 1377 0.66 0.920173
Target:  5'- -aGCugUCGCCGCGgGAcgCGUGGaUCg -3'
miRNA:   3'- gcUGugAGCGGCGCgUUagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 1509 0.66 0.903172
Target:  5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3'
miRNA:   3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 1953 0.66 0.89521
Target:  5'- aGGcCACggcCGCCGUGUAcaguuagaacgaccAUCCGCGGg- -3'
miRNA:   3'- gCU-GUGa--GCGGCGCGU--------------UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 2404 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 10162 0.67 0.877559
Target:  5'- ---aACUcCGUCGUGaguUCCGCGGUCg -3'
miRNA:   3'- gcugUGA-GCGGCGCguuAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 13081 0.68 0.799557
Target:  5'- uGGCAC-CGCCGaUGUcaguuggGAUCCGCGGaUCc -3'
miRNA:   3'- gCUGUGaGCGGC-GCG-------UUAGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 14116 0.67 0.877559
Target:  5'- cCGGCugUUuCUGCGCAccgGUCCGaacgcuaGGUCg -3'
miRNA:   3'- -GCUGugAGcGGCGCGU---UAGGCg------CCAG- -5'
30232 3' -58.3 NC_006273.1 + 17082 0.68 0.808857
Target:  5'- uGGCAggCG-CGCGUggUCCGCGG-Cg -3'
miRNA:   3'- gCUGUgaGCgGCGCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 17390 0.7 0.719091
Target:  5'- aGACGCggUUGCCGCGCGuauggCCGcCGGcCa -3'
miRNA:   3'- gCUGUG--AGCGGCGCGUua---GGC-GCCaG- -5'
30232 3' -58.3 NC_006273.1 + 19692 0.71 0.67118
Target:  5'- cCGGCG-UUGCCGC-CAugucgcUCCGCGGUCa -3'
miRNA:   3'- -GCUGUgAGCGGCGcGUu-----AGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 21947 0.7 0.719091
Target:  5'- aCGGCGCUaGCgGCGCuaucAUCUGCGGa- -3'
miRNA:   3'- -GCUGUGAgCGgCGCGu---UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 22005 0.68 0.841127
Target:  5'- gGGCuGCUgGCCGCGgGAUCgGUGGcCc -3'
miRNA:   3'- gCUG-UGAgCGGCGCgUUAGgCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 25418 0.66 0.893323
Target:  5'- uCGACugUUGCCGCGUGgcgcugcacaccuauGgcgCCGUGGg- -3'
miRNA:   3'- -GCUGugAGCGGCGCGU---------------Ua--GGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 26117 0.7 0.737838
Target:  5'- gGAUACgcCGCCGgGCg--CUGCGGUCc -3'
miRNA:   3'- gCUGUGa-GCGGCgCGuuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 28563 0.67 0.884269
Target:  5'- uGGCucuucaUCGCCGUGCAGUCC-UGGg- -3'
miRNA:   3'- gCUGug----AGCGGCGCGUUAGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 29195 0.68 0.825311
Target:  5'- cCGAgGCgCGCUGCGUGcUCCgaucggGCGGUCg -3'
miRNA:   3'- -GCUgUGaGCGGCGCGUuAGG------CGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.