miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 30657 0.66 0.897079
Target:  5'- aGACGacgCGCCGgGCGGcuUCCuGCGGcCg -3'
miRNA:   3'- gCUGUga-GCGGCgCGUU--AGG-CGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 31242 0.71 0.65176
Target:  5'- gCGACACgguaCGCCGgGUAG-CCGCgcaGGUCa -3'
miRNA:   3'- -GCUGUGa---GCGGCgCGUUaGGCG---CCAG- -5'
30232 3' -58.3 NC_006273.1 + 31398 0.66 0.908474
Target:  5'- gCGGCACgcccgaaUCGCCGCGgCucaCCGaGGUCu -3'
miRNA:   3'- -GCUGUG-------AGCGGCGC-GuuaGGCgCCAG- -5'
30232 3' -58.3 NC_006273.1 + 37287 0.66 0.902572
Target:  5'- cCGACugUCGggGCGCAGaaacuuuUCCGuCGGUg -3'
miRNA:   3'- -GCUGugAGCggCGCGUU-------AGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 40401 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 41614 0.69 0.791823
Target:  5'- uGGCGCUCGUCuCGguAUCCGUGauGUCc -3'
miRNA:   3'- gCUGUGAGCGGcGCguUAGGCGC--CAG- -5'
30232 3' -58.3 NC_006273.1 + 41912 0.69 0.746169
Target:  5'- cCGGCauuauggACUUGCCGuCGCuGUCCGUGGa- -3'
miRNA:   3'- -GCUG-------UGAGCGGC-GCGuUAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 46070 0.66 0.920173
Target:  5'- --cCACcCGCCGacgcCGCAGgugCCGCGGUg -3'
miRNA:   3'- gcuGUGaGCGGC----GCGUUa--GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 46539 0.66 0.920173
Target:  5'- cCGAgACU-GCCGCGCA--CCGuCGGg- -3'
miRNA:   3'- -GCUgUGAgCGGCGCGUuaGGC-GCCag -5'
30232 3' -58.3 NC_006273.1 + 55017 0.66 0.920173
Target:  5'- gGGCGCgUCGUCGUG--AUCC-CGGUCg -3'
miRNA:   3'- gCUGUG-AGCGGCGCguUAGGcGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 56221 0.67 0.856256
Target:  5'- uGGCGCUgCGCCGCcuaaagugucCGAUCCGCGcgggacGUCg -3'
miRNA:   3'- gCUGUGA-GCGGCGc---------GUUAGGCGC------CAG- -5'
30232 3' -58.3 NC_006273.1 + 56703 0.68 0.825311
Target:  5'- gGAacCAC-CGCCGC-CA--CCGCGGUCg -3'
miRNA:   3'- gCU--GUGaGCGGCGcGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 58471 0.66 0.914721
Target:  5'- uCGACGCUaG-CGCGCA--CCGCGG-Ca -3'
miRNA:   3'- -GCUGUGAgCgGCGCGUuaGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 64808 0.67 0.856256
Target:  5'- gCGACGaagUGCCGCGCcgccuggagUCGCGGUUc -3'
miRNA:   3'- -GCUGUga-GCGGCGCGuua------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 64981 0.71 0.66148
Target:  5'- cCGucaACUCGuuGgCGCGcgCCGUGGUCu -3'
miRNA:   3'- -GCug-UGAGCggC-GCGUuaGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 66756 0.66 0.909053
Target:  5'- aGACGCUgGugcgcgacCCGgGCAG-CCGCGGcUCg -3'
miRNA:   3'- gCUGUGAgC--------GGCgCGUUaGGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 68138 0.71 0.68085
Target:  5'- aGAuCGCUCGCUGCGCcagGAUCC-CGGg- -3'
miRNA:   3'- gCU-GUGAGCGGCGCG---UUAGGcGCCag -5'
30232 3' -58.3 NC_006273.1 + 68187 0.66 0.890777
Target:  5'- uGACGCUguuuaCGCCG-GCc-UCCGCGGcCg -3'
miRNA:   3'- gCUGUGA-----GCGGCgCGuuAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 68746 0.67 0.870651
Target:  5'- aCGGCGCguccaCGCCGCGgGucgacaugGUCCaggcgguggaaGCGGUCu -3'
miRNA:   3'- -GCUGUGa----GCGGCGCgU--------UAGG-----------CGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 68814 0.68 0.808857
Target:  5'- gGACGCguaGCCG-GCGGcgCCGCGcGUCa -3'
miRNA:   3'- gCUGUGag-CGGCgCGUUa-GGCGC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.