Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 70101 | 0.7 | 0.719091 |
Target: 5'- gGACACagCGCCGCGCuggaugacgguGAUgCGCGGc- -3' miRNA: 3'- gCUGUGa-GCGGCGCG-----------UUAgGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 70653 | 0.67 | 0.877559 |
Target: 5'- aCGACACggugcUGCUGCGCGAcacgguggCgGCGGUg -3' miRNA: 3'- -GCUGUGa----GCGGCGCGUUa-------GgCGCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 72288 | 0.69 | 0.756251 |
Target: 5'- uGACGCUgccgaugaggcCGCCGCGCAG--CGCGG-Cg -3' miRNA: 3'- gCUGUGA-----------GCGGCGCGUUagGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 77328 | 0.66 | 0.903172 |
Target: 5'- uCGACAuCUCGCCGUacgGCAAcgaGCaGGUCu -3' miRNA: 3'- -GCUGU-GAGCGGCG---CGUUaggCG-CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 78696 | 0.66 | 0.920173 |
Target: 5'- gGGCAC-CGCCGCcgGAggCGCGGUUc -3' miRNA: 3'- gCUGUGaGCGGCGcgUUagGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 87506 | 0.69 | 0.774267 |
Target: 5'- cCGACGCgaaugucggaguUUGCCaGCGCGG-CgGCGGUCu -3' miRNA: 3'- -GCUGUG------------AGCGG-CGCGUUaGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 88588 | 0.68 | 0.841127 |
Target: 5'- gCGGcCAUgggCGCCG-GCAcgCCuGCGGUCu -3' miRNA: 3'- -GCU-GUGa--GCGGCgCGUuaGG-CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 90935 | 0.77 | 0.374417 |
Target: 5'- aCGGCACgcgcaccgccucgcCGCCGUGCAGUcgcaCCGUGGUCg -3' miRNA: 3'- -GCUGUGa-------------GCGGCGCGUUA----GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 91224 | 0.66 | 0.897079 |
Target: 5'- uCGGCGauCUCGgCGCGCGAggcuUCgGCGG-Cg -3' miRNA: 3'- -GCUGU--GAGCgGCGCGUU----AGgCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 94211 | 0.72 | 0.612806 |
Target: 5'- cCGGCguGCcCGCCgccccccgGCGCAGUCCGCGG-Ca -3' miRNA: 3'- -GCUG--UGaGCGG--------CGCGUUAGGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 96061 | 0.7 | 0.713411 |
Target: 5'- gGGCACcgccucgguacccccUgGCCGagGCgAGUCCGCGGUCg -3' miRNA: 3'- gCUGUG---------------AgCGGCg-CG-UUAGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 98613 | 0.69 | 0.756251 |
Target: 5'- --cCACUCGUccguaCGCGCGAccucgUCGCGGUCg -3' miRNA: 3'- gcuGUGAGCG-----GCGCGUUa----GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 101750 | 0.66 | 0.909053 |
Target: 5'- aCGGCGgUCGCCggcggcauggGCGCG-UCgGgCGGUCu -3' miRNA: 3'- -GCUGUgAGCGG----------CGCGUuAGgC-GCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 103006 | 0.66 | 0.914721 |
Target: 5'- aGACGC-CGUCGCGCAG-CCGUaaaucaaaGUCg -3' miRNA: 3'- gCUGUGaGCGGCGCGUUaGGCGc-------CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 104632 | 0.66 | 0.90197 |
Target: 5'- gCGACGucCUCGgaGCGCAAgaaacaccguaaCCGCGGUUu -3' miRNA: 3'- -GCUGU--GAGCggCGCGUUa-----------GGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 105850 | 0.67 | 0.884269 |
Target: 5'- cCGAgGCggCGCgGCGCAGcgccggccauucUCCG-GGUCg -3' miRNA: 3'- -GCUgUGa-GCGgCGCGUU------------AGGCgCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 108568 | 0.66 | 0.920173 |
Target: 5'- -aACugUUuuugGCCGUGCAAUUCGUGGg- -3' miRNA: 3'- gcUGugAG----CGGCGCGUUAGGCGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 110946 | 0.68 | 0.841127 |
Target: 5'- uCGGCGa--GCCGCGCAcgCCcgcGCGGcCg -3' miRNA: 3'- -GCUGUgagCGGCGCGUuaGG---CGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 112552 | 0.71 | 0.65176 |
Target: 5'- uGACGCggUCGCCGCGuCAGcggCCGcCGGUg -3' miRNA: 3'- gCUGUG--AGCGGCGC-GUUa--GGC-GCCAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 113170 | 0.66 | 0.903172 |
Target: 5'- -uACACcCGUaCGCGCAggcagcauggaGUCgCGCGGUCg -3' miRNA: 3'- gcUGUGaGCG-GCGCGU-----------UAG-GCGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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