Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30232 | 3' | -58.3 | NC_006273.1 | + | 148822 | 0.67 | 0.884269 |
Target: 5'- gCGGCugcaggGCUUGCUGUGCAAcCauauaGCGGUCc -3' miRNA: 3'- -GCUG------UGAGCGGCGCGUUaGg----CGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 148852 | 0.66 | 0.909053 |
Target: 5'- uGGCugUUGCCGcCGCug-CCGCGuGa- -3' miRNA: 3'- gCUGugAGCGGC-GCGuuaGGCGC-Cag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 149511 | 0.72 | 0.593382 |
Target: 5'- uGGCGCUUGuuGCGCGggCUGCGucGUCa -3' miRNA: 3'- gCUGUGAGCggCGCGUuaGGCGC--CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 151329 | 0.67 | 0.884269 |
Target: 5'- uGGCACUcCGCC-CGCcgcUUCGCGGcUCa -3' miRNA: 3'- gCUGUGA-GCGGcGCGuu-AGGCGCC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 152148 | 0.66 | 0.914721 |
Target: 5'- uCGACGCUguccucgaUGCCgauGCGCGAUuuGCuGUCc -3' miRNA: 3'- -GCUGUGA--------GCGG---CGCGUUAggCGcCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 152455 | 0.68 | 0.841127 |
Target: 5'- gGAUguGCUUGCCGCGCAG-CUGCGc-- -3' miRNA: 3'- gCUG--UGAGCGGCGCGUUaGGCGCcag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 153784 | 0.67 | 0.870651 |
Target: 5'- uCGGC-CUcCGCCGCGg---CCGCGGcCg -3' miRNA: 3'- -GCUGuGA-GCGGCGCguuaGGCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 155484 | 0.66 | 0.920173 |
Target: 5'- aGAUG-UCGCCGCccuuGCAAUCUGCGccGUCc -3' miRNA: 3'- gCUGUgAGCGGCG----CGUUAGGCGC--CAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 162257 | 0.74 | 0.507881 |
Target: 5'- cCGGCGCaguUUGCgGCGCAgacGUCgGCGGUCc -3' miRNA: 3'- -GCUGUG---AGCGgCGCGU---UAGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 162576 | 0.71 | 0.68085 |
Target: 5'- cCGACuACcUGCUGCGCcGUCUGCGGcUCu -3' miRNA: 3'- -GCUG-UGaGCGGCGCGuUAGGCGCC-AG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 163178 | 0.68 | 0.800409 |
Target: 5'- -cGCGCUCGCUG-GUGG-CCGUGGUCu -3' miRNA: 3'- gcUGUGAGCGGCgCGUUaGGCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 163234 | 0.66 | 0.920173 |
Target: 5'- gCGGCGcCUCaGCCuccuCGCAGUCCGCGu-- -3' miRNA: 3'- -GCUGU-GAG-CGGc---GCGUUAGGCGCcag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 165673 | 0.66 | 0.908474 |
Target: 5'- aCGuCACcaccuUCGCCGCugccuacGCGAUCgGCGGcCg -3' miRNA: 3'- -GCuGUG-----AGCGGCG-------CGUUAGgCGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 167430 | 0.66 | 0.909053 |
Target: 5'- aGugGCg-GgCGCGCucUCgGCGGUCa -3' miRNA: 3'- gCugUGagCgGCGCGuuAGgCGCCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 171487 | 0.66 | 0.909053 |
Target: 5'- aGGCGCUCguucaaGCCGCGCAgAUUCuCGGcCa -3' miRNA: 3'- gCUGUGAG------CGGCGCGU-UAGGcGCCaG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 171699 | 0.66 | 0.890136 |
Target: 5'- cCGGCGCU-GCUGCGCAucacGUCCucgaucaGCGGg- -3' miRNA: 3'- -GCUGUGAgCGGCGCGU----UAGG-------CGCCag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 174112 | 0.72 | 0.603084 |
Target: 5'- aCGGC-CUCgGCCGCGCGcgCCGCGc-- -3' miRNA: 3'- -GCUGuGAG-CGGCGCGUuaGGCGCcag -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 175494 | 0.7 | 0.737838 |
Target: 5'- uCGuCACUCGCCGCGUugcGAcCUGCuguugGGUCg -3' miRNA: 3'- -GCuGUGAGCGGCGCG---UUaGGCG-----CCAG- -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 176608 | 0.69 | 0.783107 |
Target: 5'- aCGugGCUCGCUGCGU-GUuuGCGcGUa -3' miRNA: 3'- -GCugUGAGCGGCGCGuUAggCGC-CAg -5' |
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30232 | 3' | -58.3 | NC_006273.1 | + | 177255 | 0.69 | 0.774267 |
Target: 5'- gGAgGC-CGCUGCGCGugcCCGUGGUg -3' miRNA: 3'- gCUgUGaGCGGCGCGUua-GGCGCCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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