miRNA display CGI


Results 101 - 120 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 179063 0.66 0.903172
Target:  5'- aCGugACUCaauuCCGUGUAuaacuaacguGUCCGCGGa- -3'
miRNA:   3'- -GCugUGAGc---GGCGCGU----------UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 187943 0.7 0.709612
Target:  5'- cCGA-ACUCGCCGCGC---UCGCGGg- -3'
miRNA:   3'- -GCUgUGAGCGGCGCGuuaGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 190904 0.66 0.914721
Target:  5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3'
miRNA:   3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5'
30232 3' -58.3 NC_006273.1 + 192637 0.66 0.903172
Target:  5'- gCGGCguaGCUCGCCGuCGCua--UGCGGcUCg -3'
miRNA:   3'- -GCUG---UGAGCGGC-GCGuuagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 192753 0.71 0.68085
Target:  5'- uGGCAgaCGCgGUgGCAGUuuGCGGUCu -3'
miRNA:   3'- gCUGUgaGCGgCG-CGUUAggCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 194915 0.66 0.914721
Target:  5'- uCGAC-CaCGCCGaCGUAucCCGCGGUa -3'
miRNA:   3'- -GCUGuGaGCGGC-GCGUuaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 195295 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 195793 0.73 0.535906
Target:  5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3'
miRNA:   3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 196134 0.66 0.920173
Target:  5'- -aGCACggGCCGCGCcAUgCGCaaguGGUCg -3'
miRNA:   3'- gcUGUGagCGGCGCGuUAgGCG----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 196143 0.66 0.914721
Target:  5'- gCGACACagcagCGUCGCGCcAUgCCGCGuGa- -3'
miRNA:   3'- -GCUGUGa----GCGGCGCGuUA-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 196270 0.66 0.920173
Target:  5'- -aGCugUCGCCGCGgGAcgCGUGGaUCg -3'
miRNA:   3'- gcUGugAGCGGCGCgUUagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 196402 0.66 0.903172
Target:  5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3'
miRNA:   3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 196828 0.68 0.825311
Target:  5'- gGAUAC-CGUCGUGCGAccuuuugaCCGCGGUg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUa-------GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 197297 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 198323 0.67 0.884269
Target:  5'- uGGCcCUCGCaGUGCAucuaCGUGGUCg -3'
miRNA:   3'- gCUGuGAGCGgCGCGUuag-GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 200779 0.67 0.869949
Target:  5'- -uGCGCUa-CgGCGCAcggcaaguacgacAUCCGCGGUCu -3'
miRNA:   3'- gcUGUGAgcGgCGCGU-------------UAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 202014 0.69 0.765313
Target:  5'- uGGCACUCGCUGCGacacggggaCGcgCCGCaGGaUCg -3'
miRNA:   3'- gCUGUGAGCGGCGC---------GUuaGGCG-CC-AG- -5'
30232 3' -58.3 NC_006273.1 + 203113 0.69 0.746169
Target:  5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3'
miRNA:   3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 204722 0.74 0.471527
Target:  5'- cCGAgGCgCGcCCGCuGCGAUCUGCGGUUg -3'
miRNA:   3'- -GCUgUGaGC-GGCG-CGUUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 205158 0.67 0.863548
Target:  5'- gGGCGCggaaaguguccUCGCCaCGCuggCCGCGGUg -3'
miRNA:   3'- gCUGUG-----------AGCGGcGCGuuaGGCGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.