miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 235294 0.67 0.877559
Target:  5'- cCGGCACaCGCC-CGCGAcacacCCGCGG-Ca -3'
miRNA:   3'- -GCUGUGaGCGGcGCGUUa----GGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 235233 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 233869 0.67 0.856256
Target:  5'- -uGCGCaaGCaGCGUAGUCCGCGG-Cg -3'
miRNA:   3'- gcUGUGagCGgCGCGUUAGGCGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 218402 0.73 0.564452
Target:  5'- gCGAaACU-GCCGCGCGuagUCGCGGUCu -3'
miRNA:   3'- -GCUgUGAgCGGCGCGUua-GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 217545 0.66 0.909053
Target:  5'- -aGCGCUCGUCGCGCuGUCgGgauaGGUg -3'
miRNA:   3'- gcUGUGAGCGGCGCGuUAGgCg---CCAg -5'
30232 3' -58.3 NC_006273.1 + 216580 1.1 0.00265
Target:  5'- cCGACACUCGCCGCGCAAUCCGCGGUCg -3'
miRNA:   3'- -GCUGUGAGCGGCGCGUUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 215015 0.69 0.74709
Target:  5'- -cGCAC-CGCCGgguCGCGGUCCGcCGGUg -3'
miRNA:   3'- gcUGUGaGCGGC---GCGUUAGGC-GCCAg -5'
30232 3' -58.3 NC_006273.1 + 214025 0.7 0.728502
Target:  5'- aGACGgUCGCCGUaaggcaGCAA-CUGCGGUg -3'
miRNA:   3'- gCUGUgAGCGGCG------CGUUaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 213710 0.67 0.882277
Target:  5'- uGGCGCagGUCGUGCAcgucggccaccagcgCCGUGGUCu -3'
miRNA:   3'- gCUGUGagCGGCGCGUua-------------GGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 209889 0.68 0.841127
Target:  5'- aCGuCGCgggCGCCGCGUAGcagaaggcgcUCaacaaCGCGGUCa -3'
miRNA:   3'- -GCuGUGa--GCGGCGCGUU----------AG-----GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 208879 0.66 0.920173
Target:  5'- aGGCcgUUGCUGgGguGUCUGUGGUCg -3'
miRNA:   3'- gCUGugAGCGGCgCguUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 206082 0.67 0.863548
Target:  5'- uCGGCACUCGauCCGCGUAGcccUCCaGCG-UCu -3'
miRNA:   3'- -GCUGUGAGC--GGCGCGUU---AGG-CGCcAG- -5'
30232 3' -58.3 NC_006273.1 + 205158 0.67 0.863548
Target:  5'- gGGCGCggaaaguguccUCGCCaCGCuggCCGCGGUg -3'
miRNA:   3'- gCUGUG-----------AGCGGcGCGuuaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 204722 0.74 0.471527
Target:  5'- cCGAgGCgCGcCCGCuGCGAUCUGCGGUUg -3'
miRNA:   3'- -GCUgUGaGC-GGCG-CGUUAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 203113 0.69 0.746169
Target:  5'- aCGGuccCGCUCGUCGCGUugaggauAGUCgCGCGGUg -3'
miRNA:   3'- -GCU---GUGAGCGGCGCG-------UUAG-GCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 202014 0.69 0.765313
Target:  5'- uGGCACUCGCUGCGacacggggaCGcgCCGCaGGaUCg -3'
miRNA:   3'- gCUGUGAGCGGCGC---------GUuaGGCG-CC-AG- -5'
30232 3' -58.3 NC_006273.1 + 200779 0.67 0.869949
Target:  5'- -uGCGCUa-CgGCGCAcggcaaguacgacAUCCGCGGUCu -3'
miRNA:   3'- gcUGUGAgcGgCGCGU-------------UAGGCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 198323 0.67 0.884269
Target:  5'- uGGCcCUCGCaGUGCAucuaCGUGGUCg -3'
miRNA:   3'- gCUGuGAGCGgCGCGUuag-GCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 197297 0.66 0.909053
Target:  5'- uCGGCGCcCGCCGC-CGAggCCGCGcGg- -3'
miRNA:   3'- -GCUGUGaGCGGCGcGUUa-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 196828 0.68 0.825311
Target:  5'- gGAUAC-CGUCGUGCGAccuuuugaCCGCGGUg -3'
miRNA:   3'- gCUGUGaGCGGCGCGUUa-------GGCGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.