miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30232 3' -58.3 NC_006273.1 + 196402 0.66 0.903172
Target:  5'- uGGCGCUgggCGCCGgGU--UCCGCGuGUUc -3'
miRNA:   3'- gCUGUGA---GCGGCgCGuuAGGCGC-CAG- -5'
30232 3' -58.3 NC_006273.1 + 196270 0.66 0.920173
Target:  5'- -aGCugUCGCCGCGgGAcgCGUGGaUCg -3'
miRNA:   3'- gcUGugAGCGGCGCgUUagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 196143 0.66 0.914721
Target:  5'- gCGACACagcagCGUCGCGCcAUgCCGCGuGa- -3'
miRNA:   3'- -GCUGUGa----GCGGCGCGuUA-GGCGC-Cag -5'
30232 3' -58.3 NC_006273.1 + 196134 0.66 0.920173
Target:  5'- -aGCACggGCCGCGCcAUgCGCaaguGGUCg -3'
miRNA:   3'- gcUGUGagCGGCGCGuUAgGCG----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 195793 0.73 0.535906
Target:  5'- aCGGCAUgUCGCCGCGCcccCCGCcccucGGUCg -3'
miRNA:   3'- -GCUGUG-AGCGGCGCGuuaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 195295 0.72 0.622542
Target:  5'- aGACGCgcgucugcuuuUCGCCGUGCGcgCCGCacGUCg -3'
miRNA:   3'- gCUGUG-----------AGCGGCGCGUuaGGCGc-CAG- -5'
30232 3' -58.3 NC_006273.1 + 194915 0.66 0.914721
Target:  5'- uCGAC-CaCGCCGaCGUAucCCGCGGUa -3'
miRNA:   3'- -GCUGuGaGCGGC-GCGUuaGGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 192753 0.71 0.68085
Target:  5'- uGGCAgaCGCgGUgGCAGUuuGCGGUCu -3'
miRNA:   3'- gCUGUgaGCGgCG-CGUUAggCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 192637 0.66 0.903172
Target:  5'- gCGGCguaGCUCGCCGuCGCua--UGCGGcUCg -3'
miRNA:   3'- -GCUG---UGAGCGGC-GCGuuagGCGCC-AG- -5'
30232 3' -58.3 NC_006273.1 + 190904 0.66 0.914721
Target:  5'- cCGcCGCUCGCC-CGUuGUCgCGCGGc- -3'
miRNA:   3'- -GCuGUGAGCGGcGCGuUAG-GCGCCag -5'
30232 3' -58.3 NC_006273.1 + 187943 0.7 0.709612
Target:  5'- cCGA-ACUCGCCGCGC---UCGCGGg- -3'
miRNA:   3'- -GCUgUGAGCGGCGCGuuaGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 179063 0.66 0.903172
Target:  5'- aCGugACUCaauuCCGUGUAuaacuaacguGUCCGCGGa- -3'
miRNA:   3'- -GCugUGAGc---GGCGCGU----------UAGGCGCCag -5'
30232 3' -58.3 NC_006273.1 + 177255 0.69 0.774267
Target:  5'- gGAgGC-CGCUGCGCGugcCCGUGGUg -3'
miRNA:   3'- gCUgUGaGCGGCGCGUua-GGCGCCAg -5'
30232 3' -58.3 NC_006273.1 + 176608 0.69 0.783107
Target:  5'- aCGugGCUCGCUGCGU-GUuuGCGcGUa -3'
miRNA:   3'- -GCugUGAGCGGCGCGuUAggCGC-CAg -5'
30232 3' -58.3 NC_006273.1 + 175494 0.7 0.737838
Target:  5'- uCGuCACUCGCCGCGUugcGAcCUGCuguugGGUCg -3'
miRNA:   3'- -GCuGUGAGCGGCGCG---UUaGGCG-----CCAG- -5'
30232 3' -58.3 NC_006273.1 + 174112 0.72 0.603084
Target:  5'- aCGGC-CUCgGCCGCGCGcgCCGCGc-- -3'
miRNA:   3'- -GCUGuGAG-CGGCGCGUuaGGCGCcag -5'
30232 3' -58.3 NC_006273.1 + 171699 0.66 0.890136
Target:  5'- cCGGCGCU-GCUGCGCAucacGUCCucgaucaGCGGg- -3'
miRNA:   3'- -GCUGUGAgCGGCGCGU----UAGG-------CGCCag -5'
30232 3' -58.3 NC_006273.1 + 171487 0.66 0.909053
Target:  5'- aGGCGCUCguucaaGCCGCGCAgAUUCuCGGcCa -3'
miRNA:   3'- gCUGUGAG------CGGCGCGU-UAGGcGCCaG- -5'
30232 3' -58.3 NC_006273.1 + 167430 0.66 0.909053
Target:  5'- aGugGCg-GgCGCGCucUCgGCGGUCa -3'
miRNA:   3'- gCugUGagCgGCGCGuuAGgCGCCAG- -5'
30232 3' -58.3 NC_006273.1 + 165673 0.66 0.908474
Target:  5'- aCGuCACcaccuUCGCCGCugccuacGCGAUCgGCGGcCg -3'
miRNA:   3'- -GCuGUG-----AGCGGCG-------CGUUAGgCGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.